Plant Diversity ›› 2024, Vol. 46 ›› Issue (01): 39-48.DOI: 10.1016/j.pld.2023.06.003
• Articles • Previous Articles Next Articles
Carlos A. Vargasa,b, Marius Bottinc, Tiina Sarkinend, James E. Richardsona,d,e, Marcela Celisf, Boris Villanuevab, Adriana Sancheza
Received:
2022-11-21
Revised:
2023-06-05
Online:
2024-03-02
Published:
2024-01-25
Contact:
Carlos A. Vargas,E-mail:carlosalbe.vargas@urosario.edu.co
Supported by:
Carlos A. Vargasa,b, Marius Bottinc, Tiina Sarkinend, James E. Richardsona,d,e, Marcela Celisf, Boris Villanuevab, Adriana Sancheza
通讯作者:
Carlos A. Vargas,E-mail:carlosalbe.vargas@urosario.edu.co
基金资助:
Carlos A. Vargas, Marius Bottin, Tiina Sarkinen, James E. Richardson, Marcela Celis, Boris Villanueva, Adriana Sanchez. How to fill the biodiversity data gap: Is it better to invest in fieldwork or curation?[J]. Plant Diversity, 2024, 46(01): 39-48.
Carlos A. Vargas, Marius Bottin, Tiina Sarkinen, James E. Richardson, Marcela Celis, Boris Villanueva, Adriana Sanchez. How to fill the biodiversity data gap: Is it better to invest in fieldwork or curation?[J]. Plant Diversity, 2024, 46(01): 39-48.
[1] Ahrends, A., Rahbek, C., Bulling, M.T., et al., 2011. Conservation and the botanist effect. Biol. Conserv. 144, 131-140. https://doi.org/10.1016/j.biocon.2010.08.008. [2] Ball-Damerow, J.E., Brenskelle, L., Barve, N., et al., 2019. Research applications of primary biodiversity databases in the digital age. bioRxiv 1-26. https://doi.org/10.1101/605071. [3] Bebber, D.P., Carine, M. a., Wood, J.R.I., et al., 2010. Herbaria are a major frontier for species discovery. Proc. Natl. Acad. Sci. USA 107, 22169-22171. https://doi.org/10.1073/pnas.1011841108. [4] Bernal, R., Grandstein, R., Celis, M. (Eds.), 2016. Catalogo de plantas y liquenes de Colombia, Catalogo de plantas y liquenes de Colombia. Editorial Universidad Nacional de Colombia, Bogota. [5] Cardoso, D., Sarkinen, T., Alexander, S., et al., 2017. Amazon plant diversity revealed by a taxonomically verified species list. Proc. Natl. Acad. Sci. USA 114, 10695-10700. https://doi.org/10.1073/pnas.1706756114. [6] Chao, A., Jost, L., 2012. Coverage-based rarefaction and extrapolation: standardizing samples by completeness rather than size. Ecology 93, 2533-2547. https://doi.org/10.1890/11-1952.1. [7] Chen, G., Kery, M., Zhang, J., et al., 2009. Factors affecting detection probability in plant distribution studies. J. Ecol. 97, 1383-1389. https://doi.org/10.1111/j.1365-2745.2009.01560.x. [8] Daru, B.H., Park, D.S., Primack, R.B., et al., 2018. Widespread sampling biases in herbaria revealed from large-scale digitization. New Phytol. 217, 939-955. https://doi.org/10.1111/nph.14855. [9] Elith, J., H. Graham, C., P. Anderson, R., et al., 2006. Novel methods improve prediction of species' distributions from occurrence data. Ecography. 29, 129-151. https://doi.org/10.1111/j.2006.0906-7590.04596.x. [10] Engemann, K., Enquist, B.J., Sandel, B., et al., 2015. Limited sampling hampers “big data” estimation of species richness in a tropical biodiversity hotspot. Ecol. Evol. 5, 807-820. https://doi.org/10.1002/ece3.1405. [11] Etter, A., 1998. Mapa general de ecosistemas de Colombia (1: 2,000,000). Instituto Alexander von Humboldt y PNUD, Bogota. [12] Feeley, K.J., 2015. Are we filling the data void? An assessment of the amount and extent of plant collection records and census data available for tropical South America. PLoS One 10, 1-17. https://doi.org/10.1371/journal.pone.0125629. [13] Feeley, K.J., 2012. Distributional migrations, expansions, and contractions of tropical plant species as revealed in dated herbarium records. Global Change Biol. 18, 1335-1341. https://doi.org/10.1111/j.1365-2486.2011.02602.x. [14] Feeley, K.J., Silman, M.R., 2011a. Keep collecting: accurate species distribution modelling requires more collections than previously thought. Divers. Distrib. 17, 1132-1140. https://doi.org/10.1111/j.1472-4642.2011.00813.x. [15] Feeley, K.J., Silman, M.R., 2011b. The data void in modelling current and future distributions of tropical species. Global Change Biol. 17, 626-630. https://doi.org/10.1111/j.1365-2486.2010.02239.x. [16] Feeley, K.J., Silman, M.R., 2010. Modelling the responses of Andean and Amazonian plant species to climate change: the effects of georeferencing errors and the importance of data filtering. J. Biogeogr. 37, 733-740. https://doi.org/10.1111/j.1365-2699.2009.02240.x. [17] Franco, A.M.A., Palmeirim, J.M., Sutherland, W.J., 2007. A method for comparing effectiveness of research techniques in conservation and applied ecology. Biol. Conserv. 134, 96-105. https://doi.org/10.1016/j.biocon.2006.08.008. [18] Gaira, K.S., Dhar, U., Belwal, O.K., 2011. Potential of herbarium records to sequence phenological pattern: a case study of Aconitum heterophyllum in the Himalaya. Biodivers. Conserv. 20, 2201-2210. https://doi.org/10.1007/s10531-011-0082-4. [19] Garcia Marquez, J., Dormann, C., Sommer, J.H., et al., 2012. A methodological framework to quantify the spatial quality of biological databases. Biodivers. Ecol. 4, 25-39. https://doi.org/10.7809/b-e.00057. [20] Gardner, T.A., Barlow, J., Araujo, I.S., et al., 2008. The cost-effectiveness of biodiversity surveys in tropical forests. Ecol. Lett. 11, 139-150. https://doi.org/10.1111/j.1461-0248.2007.01133.x. [21] Goodwin, Z.A., Harris, D.J., Filer, D., et al., 2015. Widespread mistaken identity in tropical plant collections. Curr. Biol. 25, R1066-R1067. https://doi.org/10.1016/j.cub.2015.10.002. [22] Gotelli, N.J., Colwell, R.K., 2011. Estimating species richness, in: Biological Diversity. Frontiers in Measurement and Assessment. Oxford University press, New York. [23] Graham, C.H., Ferrier, S., Huettman, F., et al., 2004. New developments in museum-based informatics and applications in biodiversity analysis. Trends Ecol. Evol. 19, 497-503. https://doi.org/10.1016/j.tree.2004.07.006. [24] Gueta, T., Carmel, Y., 2016. Quantifying the value of user-level data cleaning for big data: a case study using mammal distribution models. Ecol. Inf. 34, 139-145. https://doi.org/10.1016/j.ecoinf.2016.06.001. [25] Hopkins, M.J.G., 2007. Modelling the known and unknown plant biodiversity of the Amazon Basin. J. Biogeogr. 34, 1400-1411. https://doi.org/10.1111/j.1365-2699.2007.01737.x. [26] Hortal, J., de Bello, F., Diniz-Filho, J.A.F., et al., 2015. Seven shortfalls that beset large-scale knowledge of biodiversity. Annu. Rev. Ecol. Evol. Syst. 46, 523-549. https://doi.org/10.1146/annurev-ecolsys-112414-054400. [27] Hsieh, T.C., Ma, K.H., Chao, A., 2016. iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers). Methods Ecol. Evol. 7, 1451-1456. https://doi.org/10.1111/2041-210X.12613. [28] Lavoie, C., 2013. Biological collections in an ever changing world: herbaria as tools for biogeographical and environmental studies. Perspect. Plant Ecol. Evol. Systemat. 15, 68-76. https://doi.org/10.1016/j.ppees.2012.10.002. [29] Maldonado, C., Molina, C.I., Zizka, A., et al., 2015. Estimating species diversity and distribution in the era of Big Data: to what extent can we trust public databases? Global Ecol. Biogeogr. 24, 973-984. https://doi.org/10.1111/geb.12326. [30] Marsico, T.D., Krimmel, E.R., Carter, J.R., et al. 2020. Small herbaria contribute unique biogeographic records to county, locality, and temporal scales. Am. J. Bot. 107, 1577-1587. https://doi.org/10.1002/ajb2.1563. [31] McCarthy, M.A., Moore, J.L., Morris, W.K., et al., 2013. The influence of abundance on detectability. Oikos 122, 717-726. https://doi.org/10.1111/j.1600-0706.2012.20781.x. [32] Meyer, C., Weigelt, P., Kreft, H., et al., 2016. Multidimensional biases, gaps and uncertainties in global plant occurrence information. Ecol. Lett. 19, 992-1006. https://doi.org/10.1111/ele.12624. [33] Monfils, A.K., Krimmel, E.R., Bates, J.M., et al. 2020. Regional collections are an essential component of biodiversity research infrastructure. Bioscience 70, 1045-1047. https://doi.org/10.1093/biosci/biaa102. [34] Morueta-Holme, N., Engemann, K., Sandoval-Acuna, P., et al., 2015. Strong upslope shifts in Chimborazo's vegetation over two centuries since Humboldt. Proc. Natl. Acad. Sci. USA 112, 12741-12745. https://doi.org/10.1073/pnas.1509938112. [35] Negret, P.J., Allan, J., Braczkowski, A., et al., 2017. Need for conservation planning in postconflict Colombia. Conserv. Biol. 31, 499-500. https://doi.org/10.1111/cobi.12935. [36] Nualart, N., Ibanez, N., Soriano, I., et al., 2017. Assessing the relevance of herbarium collections as tools for conservation biology. Bot. Rev. 83, 303-325. https://doi.org/10.1007/s12229-017-9188-z. [37] O'Connell, A.F., Gilbert, A.T., Hatfield, J.S., 2004. Contribution of natural history collection data to biodiversity assessment in national parks. Conserv. Biol. 18, 1254-1261. https://doi.org/10.1111/j.1523-1739.2004.00336.x. [38] QGIS Development Team, 2015. QGIS Geographic Information System, Open Source Geospatial Foundation Project, version 3.8.0. [39] R Develpment Core Team, 2019. R: A Language and Environment for Statistical Computing (Version 3.6.1). http://www.r-project.org/. [40] Secretaria Distrital de Ambiente., 2007. Atlas ambiental de Bogota DC. Imprenta Nacional de Colombia. Bogota (Colombia). [41] Soberon, J., Jimenez, R., Golubov, J., et al., 2007. Assessing completeness of biodiversity databases at different spatial scales. Ecography 30, 152-160. https://doi.org/10.1111/j.0906-7590.2007.04627.x. [42] Soberon, J., Peterson, A.T., 2004. Biodiversity informatics: managing and applying primary biodiversity data. Philos. Trans. R. Soc. B Biol. Sci. 359, 689-698. https://doi.org/10.1098/rstb.2003.1439. [43] Sousa-Baena, M.S., Couto, L., Townsend, A., 2013. Completeness of digital accessible knowledge of the plants of Brazil and priorities for survey and inventory. Divers. Distrib. 20, 1-13. https://doi.org/10.1111/ddi.12136. [44] Suarez, A. V., Tsutsui, N.D., 2004. The value of museum collections for research and society. Bioscience 54, 66-74. [45] Syfert, M.M., Smith, M.J., Coomes, D.A., 2013. The effects of sampling bias and model complexity on the predictive performance of MaxEnt species distribution models. PLoS One 8. https://doi.org/10.1371/journal.pone.0055158. [46] Targetti, S., Herzog, F., Geijzendorffer, I.R., et al., 2014. Estimating the cost of different strategies for measuring farmland biodiversity: evidence from a Europe-wide field evaluation. Ecol. Indicat. 45, 434-443. https://doi.org/10.1016/j.ecolind.2014.04.050. [47] Van der Hammen, T., 1986. La Sabana de Bogota y su lago en el Pleniglacial Medio. Caldasia 15, 249-262. [48] Vargas, C.A., Bottin, M., Sarkinen, T., et al., 2022. Environmental and geographical biases in plant specimen data from the Colombian Andes. Bot. J. Linn. Soc. 1-14. https://doi.org/10.1093/botlinnean/boac035. [49] Vogel, C., Bordignon, S.A. de L., Trevisan, R., et al., 2017. Implications of poor taxonomy in conservation. J. Nat. Conserv. 36, 10-13. https://doi.org/10.1016/j.jnc.2017.01.003. [50] Wieczorek, J., Guo, Q., Hijmans, R.J., 2004. The point-radius method for georeferencing locality descriptions and calculating associated uncertainty. Int. J. Geogr. Inf. Sci. 18, 745-767. https://doi.org/10.1080/13658810412331280211. |
[1] | Fu-Qiang Huang, Josep Peñuelas, Jordi Sardans, Scott L. Collins, Kai-Liang Yu, Man-Qiong Liu, Jiu-Ying Pei, Wen-Bin Ke, Jian-Sheng Ye. Plant use of water across soil depths regulates species dominance under nitrogen addition [J]. Plant Diversity, 2025, 47(03): 479-488. |
[2] | Shuran Yao, Weigang Hu, Mingfei Ji, Abraham Allan Degen, Qiajun Du, Muhammad Adnan Akram, Yuan Sun, Ying Sun, Yan Deng, Longwei Dong, Haiyang Gong, Qingqing Hou, Shubin Xie, Xiaoting Wang, Jinzhi Ran, Bernhard Schmid, Qinfeng Guo, Karl J. Niklas, Jianming Deng. Distribution, species richness, and relative importance of different plant life forms across drylands in China [J]. Plant Diversity, 2025, 47(02): 273-281. |
[3] | Wei Wang, Kun Xin, Yujun Chen, Yuechao Chen, Zhongmao Jiang, Nong Sheng, Baowen Liao, Yanmei Xiong. Spatio-temporal variation of water salinity in mangroves revealed by continuous monitoring and its relationship to floristic diversity [J]. Plant Diversity, 2024, 46(01): 134-143. |
[4] | Hong Qian, Jian Zhang, Meichen Jiang. Global patterns of taxonomic and phylogenetic diversity of flowering plants:Biodiversity hotspots and coldspots [J]. Plant Diversity, 2023, 45(03): 265-271. |
[5] | Wen-Jing Fang, Qiong Cai, Qing Zhao, Cheng-Jun Ji, Jiang-Ling Zhu, Zhi-Yao Tang, Jing-Yun Fang. Species richness patterns and the determinants of larch forests in China [J]. Plant Diversity, 2022, 44(05): 436-444. |
[6] | Li-Shen Qian, Hong-Hua Shi, Xiao-Kun Ou, Hang Sun. Elevational patterns of functional diversity and trait of Delphinium (Ranunculaceae) in Hengduan Mountains, China [J]. Plant Diversity, 2022, 44(01): 20-29. |
[7] | Wen-Yun Chen, Tao Su. Asian monsoon shaped the pattern of woody dicotyledon richness in humid regions of China [J]. Plant Diversity, 2020, 42(03): 148-154. |
[8] | Kflay Gebrehiwot, Sebsebe Demissew, Zerihun Woldu, Mekbib Fekadu, Temesgen Desalegn, Ermias Teferi. Elevational changes in vascular plants richness, diversity, and distribution pattern in Abune Yosef mountain range, Northern Ethiopia [J]. Plant Diversity, 2019, 41(04): 220-228. |
[9] | Mouldi Gamoun, Azaiez Ouled Belgacem, Mounir Louhaichi. Diversity of desert rangelands of Tunisia [J]. Plant Diversity, 2018, 40(05): 217-225. |
[10] | Jie Gao, Peng Zhang, Xing Zhang, Yanhong Liu. Multi-scale analysis on species diversity within a 40-ha old-growth temperate forest [J]. Plant Diversity, 2018, 40(02): 45-49. |
[11] | Uma Shankar, Amit Kumar Tripathi. Rainforests north of the Tropic of Cancer: Physiognomy, floristics and diversity in ‘lowland rainforests’ of Meghalaya, India [J]. Plant Diversity, 2017, 39(01): 20-36. |
[12] | Yahuang Luo, Jie Liu, Shaolin Tan, Marc W. Cadotte, Kun Xu, Lianming Gao, Dezhu Li. Trait variation and functional diversity maintenance of understory herbaceous species coexisting along an elevational gradient in Yulong Mountain, Southwest China [J]. Plant Diversity, 2016, 38(06): 303-311. |
[13] | HUANG Man-Rong-, GUO Wei. Altitudinal Gradients of Lichen Species Richness in Tibet, China [J]. Plant Diversity, 2012, 34(2): 192-198. |
[14] | David A.GALBRAITH, Natalie E.IWANYCKI, Brechann V.McGOEY, Jamie McGREGOR. The Evolving Role of Botanical Gardens and Natural Areas: A Floristic Case Study from Royal Botanical Gardens, Canada [J]. Plant Diversity, 2011, 33(01): 123-131. |
[15] | DAO Zhi - Ling GUOHui-Jun DUAN Jin - Gang CHEN Wen - Song DUAN Hong - Lian. Household - based Agrobiodiversity Assessment (HH-ABA) of Paddy Fields of Gaoligongshan Region - A Case from Hanlong Village, Baihualing, Baoshan, West Yunnan, China [J]. Plant Diversity, 2001, 23(13): 1-3. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||