Plant Diversity ›› 2026, Vol. 48 ›› Issue (04): 704-719.DOI: 10.1016/j.pld.2026.03.011
• Articles • Previous Articles Next Articles
Xin Yana, Enze Lia, Xingyong Cuia, Liangcheng Zhaob, Wenpan Donga
Received:2025-09-25
Revised:2026-03-13
Accepted:2026-03-16
Online:2026-03-20
Published:2026-07-25
Contact:
Wenpan Dong,E-mail:wpdong@bjfu.edu.cn
Supported by:Xin Yana, Enze Lia, Xingyong Cuia, Liangcheng Zhaob, Wenpan Donga
通讯作者:
Wenpan Dong,E-mail:wpdong@bjfu.edu.cn
基金资助:Xin Yan, Enze Li, Xingyong Cui, Liangcheng Zhao, Wenpan Dong. Niche evolution and asymmetric diversification in elm species (Ulmaceae)[J]. Plant Diversity, 2026, 48(04): 704-719.
Xin Yan, Enze Li, Xingyong Cui, Liangcheng Zhao, Wenpan Dong. Niche evolution and asymmetric diversification in elm species (Ulmaceae)[J]. Plant Diversity, 2026, 48(04): 704-719.
| [1] Beerling, D.J., Royer, D.L., 2011. Convergent Cenozoic CO2 history. Nat. Geosci. 4, 418-420. https://doi.org/10.1038/ngeo1186. [2] Blois, J.L., Bellve, A.M., Jarzyna, M.A., et al., 2025. Paleobiogeographic insights gained from ecological niche models: progress and continued challenges. Paleobiology 51, 8-28. https://doi.org/10.1017/pab.2024.16. [3] Boardman, G.S., Secord, R., 2013. Stable isotope paleoecology of White River ungulates during the Eocene-Oligocene climate transition in northwestern Nebraska. Palaeogeogr. Palaeoclimatol. Palaeoecol. 375, 38-49. https://doi.org/10.1016/j.palaeo.2013.02.010. [4] Bolger, A.M., Lohse, M., Usadel, B., 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114-2120. https://doi.org/10.1093/bioinformatics/btu170. [5] Bouckaert, R., Heled, J., Kuhnert, D., et al., 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 10, e1003537. https://doi.org/10.1371/journal.pcbi.1003537. [6] Carmona, C.P., De Bello, F., Mason, N.W., et al., 2016. Traits without borders: integrating functional diversity across scales. Trends Ecol. Evol. 31, 382-394. https://doi.org/10.1016/j.tree.2016.02.003. [7] Certini, D., Fazan, L., Nakayama, N., et al., 2020. Velocity of the falling dispersal units in Zelkova abelicea: remarkable evolutionary conservation within the relict tree genus. Am. J. Bot. 107, 1831-1838. https://doi.org/10.1002/ajb2.1581. [8] Chen, Y.S., Meseguer, A.S., Godefroid, M., et al., 2017. Out-of-India dispersal of Paliurus (Rhamnaceae) indicated by combined molecular phylogenetic and fossil evidence. Taxon 66, 78-90. https://doi.org/10.12705/661.4. [9] Coelho, M.T.P., Barreto, E., Rangel, T.F., et al., 2023. The geography of climate and the global patterns of species diversity. Nature 622, 537-544. https://doi.org/10.1038/s41586-023-06577-5. [10] Coiro, M., Allio, R., Mazet, N., et al., 2023. Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity. New Phytol. 240, 1616-1635. https://doi.org/10.1111/nph.19010. [11] Condamine, F.L., Rolland, J., Morlon, H., 2019. Assessing the causes of diversification slowdowns: temperature-dependent and diversity-dependent models receive equivalent support. Ecol. Lett. 22, 1900-1912. https://doi.org/10.1111/ele.13382. [12] Cox, C.B., Healey, I.N., Moore, P.D., 1976. Biogeography: an ecological and evolutionary approach. Blackwell Scientific Publications, Oxford. [13] Denk, T., Grimsson, F., Zetter, R., 2010. Episodic migration of oaks to Iceland: Evidence for a North Atlantic "land bridge" in the latest Miocene. Am. J. Bot. 97, 276-287. https://doi.org/10.3732/ajb.0900195. [14] Denk, T., Grimsson, F., Zetter, R., et al., 2011. The biogeographic history of Iceland-the North Atlantic land bridge revisited, in: Denk, T., Grimsson, F., Zetter, R. (Eds.), Late Cainozoic Floras of Iceland. Topics in Geobiology, vol 35. Springer, Dordrecht, pp. 647-668 https://doi.org/10.1007/978-94-007-0372-8_12. [15] Dong, W., Li, E., Liu, Y., et al., 2022. Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family. BMC Biol. 20, 1-25. https://doi.org/10.1186/s12915-022-01297-0. [16] Dong, W., Liu, Y., Xu, C., et al., 2021. Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae). BMC Genomics 22, 293. https://doi.org/10.1186/s12864-021-07590-6. [17] Etienne, R.S., Haegeman, B., Stadler, T., et al., 2012. Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record. Proc. R. Soc. B-Biol. Sci. 279, 1300-1309. https://doi.org/10.1098/rspb.2011.1439. [18] Farnsworth, A., Lunt, D., O'Brien, C., et al., 2019. Climate sensitivity on geological timescales controlled by nonlinear feedbacks and ocean circulation. Geophys. Res. Lett. 46, 9880-9889. https://doi.org/10.1029/2019GL083574. [19] Fick, S.E., Hijmans, R.J., 2017. WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. Int. J. Climatol. 37, 4302-4315. https://doi.org/10.1002/joc.5086. [20] Fragniere, Y., Song, Y.G., Fazan, L., et al., 2021. Biogeographic overview of Ulmaceae: diversity, distribution, ecological preferences, and conservation status. Plants 10, 1111. https://doi.org/10.3390/plants10061111. [21] Friedrich, O., Norris, R.D., Erbacher, J., 2012. Evolution of middle to Late Cretaceous oceans-A 55 m.y. record of Earth's temperature and carbon cycle. Geology 40, 107-110. https://doi.org/10.1130/G32701.1. [22] Fu, L., 1980. A study on the genus Ulmus in China. Journ. N. E. Forestry Univ. 3, 1-40. [23] Fu, L., Xin, Y.Q., Whittemore, A.T., 2004. Ulmaceae, in: Wu, Z.Y., Raven, P.H., Hong, D.Y. (Eds.), Flora of China, vol 5. Science Press, Beijing, pp. 1-19. [24] Ginestet, C., 2011. ggplot2: elegant graphics for data analysis. J. R. Stat. Soc. Ser. A-Stat. Soc. 174, 245-246. https://doi.org/10.1111/j.1467-985X.2010.00676_9.x. [25] Givnish, T.J., Spalink, D., Ames, M., et al., 2015. Orchid phylogenomics and multiple drivers of their extraordinary diversification. Proc. R. Soc. B-Biol. Sci. 282, 20151553. https://doi.org/10.1098/rspb.2015.1553. [26] Givnish, T.J., Zuluaga, A., Spalink, D., et al., 2018. Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. Am. J. Bot. 105, 1888-1910. https://doi.org/10.1002/ajb2.1178. [27] Group, A.P., Chase, M.W., Christenhusz, M.J., et al., 2016. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG IV. Bot. J. Linnean Soc. 181, 1-20. https://doi.org/10.1111/boj.12385. [28] Heath, T.A., Huelsenbeck, J.P., Stadler, T., 2014. The fossilized birth-death process for coherent calibration of divergence-time estimates. Proc. Natl. Acad. Sci. U.S.A. 111, 2957-2966. https://doi.org/10.1073/pnas.1319091111. [29] Henao Diaz, L.F., Harmon, L.J., Sugawara, M.T., et al., 2019. Macroevolutionary diversification rates show time dependency. Proc. Natl. Acad. Sci. U.S.A. 116, 7403-7408. https://doi.org/10.1073/pnas.1818058116. [30] Hijmans, R.J., Elith, J., 2013. Species distribution modeling with R. R Cran Project https://doi.org/10.1016/B978-0-12-384719-5.00318-X. [31] Hijmans, R.J., Van Etten, J., Cheng, J., et al., 2015. Package ‘raster’. R package 734, 473. https://rspatial.org/raster. [32] Ho, S.Y., Lanfear, R., Bromham, L., et al., 2011. Time-dependent rates of molecular evolution. Mol. Ecol. 20, 3087-3101. https://doi.org/10.1111/j.1365-294X.2011.05178.x. [33] Hohna, S., Landis, M.J., Heath, T.A., et al., 2016. RevBayes: bayesian phylogenetic inference using graphical models and an interactive model-specification language. Syst. Biol. 65, 726-736. https://doi.org/10.1093/sysbio/syw021. [34] Hu, X., Wang, C., 1999. Several major geological events and global climate change since 100Ma. Explor. Nat. 18, 53-58. [35] Huang, D.I., Cronk, Q.C., 2015. Plann: a command-line application for annotating plastome sequences. Appl. Plant Sci. 3, 1500026. https://doi.org/10.3732/apps.1500026. [36] Huang, S., Shiono, T., Fujinuma, J., et al., 2024. Dispersal limitations and ecological adaptions shape phylogenetic diversity patterns of angiosperm woody plant communities along latitudinal and elevational gradients in East Asian islands. Glob. Ecol. Conserv. 54, e03049. https://doi.org/10.1016/j.gecco.2024.e03049. [37] Jaramillo, C., Ochoa, D., Contreras, L., et al., 2010. Effects of rapid global warming at the Paleocene-Eocene boundary on neotropical vegetation. Science 330, 957-961. https://doi.org/10.1126/science.1193833. [38] Jin, J.J., Yu, W.B., Yang, J.B., et al., 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21, 1-31. https://doi.org/10.1186/s13059-020-02154-5. [39] Jones, T.D., Lunt, D.J., Schmidt, D.N., et al., 2013. Climate model and proxy data constraints on ocean warming across the Paleocene-Eocene Thermal Maximum. Earth-Sci. Rev. 125, 123-145. https://doi.org/10.1016/j.earscirev.2013.07.004. [40] Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., et al., 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat. Methods 14, 587-589. https://doi.org/10.1038/nmeth.4285. [41] Katoh, K., Standley, D.M., 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30, 772-780. https://doi.org/10.1093/molbev/mst010. [42] Kearse, M., Moir, R., Wilson, A., et al., 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647-1649. https://doi.org/10.1093/bioinformatics/bts199. [43] Kidwell, S.M., Holland, S.M., 2002. The quality of the fossil record: implications for evolutionary analyses. Annu. Rev. Ecol. Syst. 33, 561-588. https://doi.org/10.1146/annurev.ecolsys.33.030602.152151. [44] Korasidis, V.A., Wing, S.L., Shields, C.A., et al., 2022. Global changes in terrestrial vegetation and continental climate during the Paleocene-Eocene Thermal Maximum. Paleoceanogr. Paleoclimatology 37, e2021PA004325. https://doi.org/10.1029/2021PA004325. [45] Kozlowski, G., Betrisey, S., Gang, S.Y., et al., 2018. The Red List of Zelkova. Natural History Museum Fribourg, Switzerland. [46] Kubota, Y., Kusumoto, B., Shiono, T., et al., 2017. Phylogenetic properties of Tertiary relict flora in the east Asian continental islands: imprint of climatic niche conservatism and in situ diversification. Ecography 40, 436-447. https://doi.org/10.1111/ecog.02033. [47] Larrue, S., Baray, J.L., Chadeyron, J., et al., 2023. Modeling long-distance seed dispersal of the invasive tree Spathodea campanulata in the Society Islands. Ecol. Appl. 33, e2839. https://doi.org/10.1002/eap.2839. [48] Le, S., Josse, J., Husson, F., 2008. FactoMineR: an R package for multivariate analysis. J. Stat. Softw. 25, 1-18. https://doi.org/10.18637/jss.v025.i01. [49] Li, E., Liu, K., Guo, C., et al., 2025. Evolutionary divergence contributes to species richness anomalies among intercontinental disjunct regions of ash species (Fraxinus, Oleaceae). J. Syst. Evol. 63, 861-875. https://doi.org/10.1111/jse.13181. [50] Li, E., Wang, Y., Liu, K., et al., 2024. Historical climate change and vicariance events contributed to the intercontinental disjunct distribution pattern of ash species (Fraxinus, Oleaceae). Commun. Biol. 7, 603. https://doi.org/10.1038/s42003-024-06296-1. [51] Li, J., Wang, S., Yu, J., et al., 2013. A modified CTAB protocol for plant DNA extraction. Chin. Bull. Bot. 48, 72-78. https://doi.org/10.3724/SP.J.1259.2013.00072. [52] Ling, Y.Y., Peng, H.W., Lian, L., et al., 2024. Out of and in East Asia: phylogeny, biogeography and diversification of Thalictroideae (Ranunculaceae) in the Northern Hemisphere. Ann. Bot. 134, 1251-1262. https://doi.org/10.1093/aob/mcae148. [53] Linnert, C., Robinson, S.A., Lees, J.A., et al., 2014. Evidence for global cooling in the Late Cretaceous. Nat. Commun. 5, 4194. https://doi.org/10.1038/ncomms5194. [54] Liu, K., Li, E., Cui, X., et al., 2024. Key innovations and niche variation promoted rapid diversification of the widespread Juniperus (Cupressaceae). Commun. Biol. 7, 1002. https://doi.org/10.1038/s42003-024-06687-4. [55] Lopez-Antonanzas, R., Simoes, T.R., Condamine, F.L., et al., 2024. Bayesian tip-dated timeline for diversification and major biogeographic events in Muroidea (Rodentia), the largest mammalian radiation. BMC Biol. 22, 270. https://doi.org/10.1186/s12915-024-02053-2. [56] Lopez-Pujol, J., Zhang, F.M., Sun, H.Q., et al., 2011. Centres of plant endemism in China: places for survival or for speciation? J. Biogeogr. 38, 1267-1280. https://doi.org/10.1111/j.1365-2699.2011.02504.x. [57] Lunt, D.J., Farnsworth, A., Loptson, C., et al., 2016. Palaeogeographic controls on climate and proxy interpretation. Clim. Past. 12, 1181-1198. https://doi.org/10.5194/cp-12-1181-2016. [58] Manchester, S.R., 1999. Biogeographical relationships of North American tertiary floras. Ann. Mo. Bot. Gard. 86, 472-522. https://doi.org/10.2307/2666183. [59] Manchester, S.R., Chen, Z.D., Lu, A.M., et al., 2009. Eastern Asian endemic seed plant genera and their paleogeographic history throughout the Northern Hemisphere. J. Syst. Evol. 47, 1-42. https://doi.org/10.1111/j.1759-6831.2009.00001.x. [60] Manchester, S.R., Tiffney, B.H., 2001. Integration of paleobotanical and neobotanical data in the assessment of phytogeographic history of holarctic angiosperm clades. Int. J. Plant Sci. 162, S19-S27. https://doi.org/10.1086/323657. [61] Manos, P.S., Meireles, J.E., 2015. Biogeographic analysis of the woody plants of the Southern Appalachians: Implications for the origins of a regional flora. Am. J. Bot. 102, 780-804. https://doi.org/10.3732/ajb.1400530. [62] Marin, J., Hedges, S., 2016. Time best explains global variation in species richness of amphibians, birds and mammals. J. Biogeogr. 43, 1069-1079. https://doi.org/10.1111/jbi.12709. [63] McPeek, M.A., Brown, J.M., 2007. Clade age and not diversification rate explains species richness among animal taxa. Am. Nat. 169, E97-E106. https://doi.org/10.1086/512135. [64] Miller, K.G., Wright, J.D., Browning, J.V., 2005. Visions of ice sheets in a greenhouse world. Mar. Geol. 217, 215-231. https://doi.org/10.1016/j.margeo.2005.02.007. [65] Milne, R.I., 2006. Northern hemisphere plant disjunctions: a window on tertiary land bridges and climate change? Ann. Bot. 98, 465-472. https://doi.org/10.1093/aob/mcl148. [66] Mitchell, J.S., Etienne, R.S., Rabosky, D.L., 2019. Inferring diversification rate variation from phylogenies with fossils. Syst. Biol. 68, 1-18. https://doi.org/10.1093/sysbio/syy035. [67] Muller, R.D., Cannon, J., Qin, X., et al., 2018. GPlates: building a virtual earth through deep time. Geochem. Geophys. Geosyst. 19, 2243-2261. https://doi.org/10.1029/2018GC007584. [68] Nee, S., Mooers, A.O., Harvey, P.H., 1992. Tempo and mode of evolution revealed from molecular phylogenies. Proc. Natl. Acad. Sci. U.S.A. 89, 8322-8326. https://doi.org/10.1073/pnas.89.17.8322. [69] Neubig, K., Herrera, F., Manchester, S., et al., 2012. Fossils, biogeography and dates in an expanded phylogeny of Ulmaceae. In: Botany 2012-Annual Meeting of the Botanical Society of America, Columbus, OH, USA, 7-11 July 2012. [70] Oyama, H., Fuse, O., Tomimatsu, H., et al., 2018. Variable seed behavior increases recruitment success of a hardwood tree, Zelkova serrata, in spatially heterogeneous forest environments. For. Ecol. Manage. 415, 1-9. https://doi.org/10.1016/j.foreco.2018.02.004. [71] Paradis, E., Claude, J., Strimmer, K., 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20, 289-290. https://doi.org/10.1093/bioinformatics/btg412. [72] Pearson, P.N., Foster, G.L., Wade, B.S., 2009. Atmospheric carbon dioxide through the Eocene-Oligocene climate transition. Nature 461, 1110-1113. https://doi.org/10.1038/nature08447. [73] Pound, M.J., Salzmann, U., 2017. Heterogeneity in global vegetation and terrestrial climate change during the late Eocene to early Oligocene transition. Sci. Rep. 7, 43386. https://doi.org/10.1038/srep43386. [74] Qian, H., Deng, T., Jin, Y., et al., 2019. Phylogenetic dispersion and diversity in regional assemblages of seed plants in China. Proc. Natl. Acad. Sci. U.S.A. 116, 23192-23201. https://doi.org/10.1073/pnas.1822153116. [75] Rabosky, D.L., 2009. Ecological limits on clade diversification in higher taxa. Am. Nat. 173, 662-674. https://doi.org/10.1086/597378. [76] Rabosky, D.L., 2013. Diversity-dependence, ecological speciation, and the role of competition in macroevolution. Annu. Rev. Ecol. Evol. Syst. 44, 481-502. https://doi.org/10.1146/annurev-ecolsys-110512-135800. [77] Rabosky, D.L., Grundler, M., Anderson, C., et al., 2014. BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees. Methods Ecol. Evol. 5, 701-707. https://doi.org/10.1111/2041-210X.12199. [78] Rabosky, D.L., Lovette, I.J., 2008. Density-dependent diversification in North American wood warblers. Proc. R. Soc. B-Biol. Sci. 275, 2363-2371. https://doi.org/10.1098/rspb.2008.0630. [79] Rambaut, A., 2015. FigTree, v1.4.2: tree figure drawing tool. Molecular evolution, phylogenetics and epidemiology. Available online at: http://tree.bio.ed.ac.uk/software/figtree. [80] Rambaut, A., Drummond, A.J., Xie, D., et al., 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Syst. Biol. 67, 901-904. https://doi.org/10.1093/sysbio/syy032. [81] Ramirez, S.R., Gravendeel, B., Singer, R.B., et al., 2007. Dating the origin of the Orchidaceae from a fossil orchid with its pollinator. Nature 448, 1042-1045. https://doi.org/10.1038/nature06039. [82] R Core Team, 2021. R: a Language and Environment for Statistical Computing. R foundation for statistical computing, Vienna, Austria https://www.R-project.org,. [83] Ree, R.H., Moore, B.R., Webb, C.O., et al., 2005. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution 59, 2299-2311. https://doi.org/10.1111/j.0014-3820.2005.tb00940.x. [84] Ree, R.H., Smith, S.A., 2008. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 57, 4-14. https://doi.org/10.1080/10635150701883881. [85] Retallack, G.J., 2007. Cenozoic paleoclimate on land in North America. J. Geol. 115, 271-294. https://doi.org/10.1086/512753. [86] Ricklefs, R.E., 2007. Estimating diversification rates from phylogenetic information. Trends Ecol. Evol. 22, 601-610. https://doi.org/10.1016/j.tree.2007.06.013. [87] Ronquist, F., Teslenko, M., Van Der Mark, P., et al., 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61, 539-542. https://doi.org/10.1093/sysbio/sys029. [88] Sanmartin, I., 2012. Historical biogeography: evolution in time and space. Evo. Edu. Outreach 5, 555-568. https://doi.org/10.1007/s12052-012-0421-2. [89] Seidler, T.G., Plotkin, J.B., 2006. Seed dispersal and spatial pattern in tropical trees. PLoS Biol. 4, e344. https://doi.org/10.1371/journal.pbio.0040344. [90] Sekar, K.C., Thapliyal, N., Pandey, A., et al., 2023. Plant species diversity and density patterns along altitude gradient covering high-altitude alpine regions of west Himalaya, India. Geol. Ecol. Landsc. 8, 559-573. https://doi.org/10.1080/24749508.2022.2163606. [91] Serna-Sanchez, M.A., Perez-Escobar, O.A., Bogarin, D., et al., 2021. Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution. Sci. Rep. 11, 6858. https://doi.org/10.1038/s41598-021-83664-5. [92] Serrano-Serrano, M.L., Perret, M., Guignard, M., et al., 2015. Decoupled evolution of floral traits and climatic preferences in a clade of Neotropical Gesneriaceae. BMC Evol. Biol. 15, 1-12. https://doi.org/10.1186/s12862-015-0527-6. [93] Seton, M., Muller, R.D., Zahirovic, S., et al., 2012. Global continental and ocean basin reconstructions since 200 Ma. Earth-Sci. Rev. 113, 212-270. https://doi.org/10.1016/j.earscirev.2012.03.002. [94] Sheldon, N.D., Costa, E., Cabrera, L., et al., 2012. Continental climatic and weathering response to the Eocene-Oligocene transition. J. Geol. 120, 227-236. http://www.jstor.org/stable/10.1086/663984. [95] Sherman-Broyles, S., Barker, W., Schulz, L., 1997. Ulmaceae Mirbel, in: Flora of North America Editorial Committee (Eds.), Flora of North America North of Mexico, vol 3. New York, Oxford University Press, pp. 368-380. [96] Silvestro, D., Tejedor, M.F., Serrano-Serrano, M.L., et al., 2019. Early arrival and climatically-linked geographic expansion of New World monkeys from tiny African ancestors. Syst. Biol. 68, 78-92. https://doi.org/10.1093/sysbio/syy046. [97] Song, W., Li, Y., Luo, A., et al., 2024. Historical and contemporary climate jointly determine angiosperm plant diversity patterns across east Eurasia. Ecography 47, e07062. https://doi.org/10.1111/ecog.07062. [98] Stephens, M., 1999. Bayesian analysis of mixture models with an unknown number of components-an alternative to reversible jump methods. Ann. Stat. 28, 40-74. https://www.jstor.org/stable/2673981. [99] Stephens, P.R., Wiens, J.J., 2003. Explaining species richness from continents to communities: the time-for-speciation effect in emydid turtles. Am. Nat. 161, 112-128. http://www.jstor.org/stable/10.1086/345091. [100] Tang, C.Q., Matsui, T., Ohashi, H., et al., 2018. Identifying long-term stable refugia for relict plant species in East Asia. Nat. Commun. 9, 4488. https://doi.org/10.1038/s41467-018-06837-3. [101] Terry Jr, D.O., 2001. Paleopedology of the Chadron Formation of Northwestern Nebraska: implications for paleoclimatic change in the North American midcontinent across the Eocene-Oligocene boundary. Palaeogeogr. Palaeoclimatol. Palaeoecol. 168, 1-38. https://doi.org/10.1016/S0031-0182(00)00248-0. [102] Thibault, N., Gardin, S., 2006. Maastrichtian calcareous nannofossil biostratigraphy and paleoecology in the Equatorial Atlantic (Demerara Rise, ODP Leg 207 Hole 1258A). Rev. Micropaleontol. 49, 199-214. https://doi.org/10.1016/j.revmic.2006.08.002. [103] Tian, Q., Stull, G.W., Kellermann, J., et al., 2024. Rapid in situ diversification rates in Rhamnaceae explain the parallel evolution of high diversity in temperate biomes from global to local scales. New Phytol. 241, 1851-1865. https://doi.org/10.1111/nph.19504. [104] Tietje, M., Antonelli, A., Baker, W.J., et al., 2022. Global variation in diversification rate and species richness are unlinked in plants. Proc. Natl. Acad. Sci. U.S.A. 119, e2120662119. https://doi.org/10.1073/pnas.2120662119. [105] Tiffney, B.H., 1985a. The Eocene North Atlantic land bridge: its importance in Tertiary and modern phytogeography of the Northern Hemisphere. J. Arnold Arbor. 66, 243-273. http://www.jstor.org/stable/43782164. [106] Tiffney, B.H., 1985b. Perspectives on the origin of the floristic similarity between eastern Asia and eastern North America. J. Arnold Arbor. 66, 73-94. https://www.jstor.org/stable/43782157. [107] Tiffney, B.H., Manchester, S.R., 2001. The use of geological and paleontological evidence in evaluating plant phylogeographic hypotheses in the northern hemisphere tertiary. Int. J. Plant Sci. 162, S3-S17. http://www.jstor.org/stable/10.1086/323880. [108] Todzia, C.A., 1989. A revision of Ampelocera (Ulmaceae). Ann. Mo. Bot. Gard. 76, 1087-1102. https://doi.org/10.2307/2399693. [109] Todzia, C.A., 1993. Ulmaceae, in: Kubitzki, K., Rohwer, J.G., Bittrich, V. (Eds.), The families and genera of vascular plants, vol 2. Springer, Berlin, pp. 603-611. [110] Ulrich, W., 2006. Decomposing the process of species accumulation into area dependent and time dependent parts. Ecol. Res. 21, 578-585. https://doi.org/10.1007/s11284-006-0150-5. [111] Valdes, P.J., Scotese, C.R., Lunt, D.J., 2021. Deep ocean temperatures through time. Clim. Past. 17, 1483-1506. https://doi.org/10.5194/cp-17-1483-2021. [112] Valentine, J.W., 1985. Biotic diversity and clade diversity, in: Valentine, J.W. (Ed.), Phanerozoic diversity patterns. Princeton Univ. Press, Princeton, NJ, pp. 419-424. [113] Walker, T.D., Valentine, J.W., 1984. Equilibrium models of evolutionary species diversity and the number of empty niches. Am. Nat. 124, 887-899. https://doi.org/10.1086/284322. [114] Wang, J., Zhou, J., Zhang, W., et al., 2025. Phylogeny, diversification and biogeography of charming moth-like cicadas in the tribe Gaeanini Distant (Hemiptera, Cicadidae). Syst. Entomol. 50, 713-735. https://doi.org/10.1111/syen.12676. [115] Wang, Q., Manchester, S.R., Li, C., et al., 2010. Fruits and leaves of Ulmus from the Paleogene of Fushun, Northeastern China. Int. J. Plant Sci. 171, 221-226. https://doi.org/10.1086/648991. [116] Wang, Y., Wang, H., Ye, C., et al., 2024. Progress in systematics and biogeography of Orchidaceae. Plant Divers. 46, 425-434. https://doi.org/10.1016/j.pld.2024.05.002. [117] Wen, J., 1999. Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annu. Rev. Ecol. Syst. 30, 421-455. https://doi.org/10.1146/annurev.ecolsys.30.1.421. [118] Wiens, J.J., 2011. The causes of species richness patterns across space, time, and clades and the role of "ecological limits". Q. Rev. Biol. 86, 75-96. https://doi.org/10.1086/659883. [119] Wiens, J.J., Graham, C.H., 2005. Niche conservatism: integrating evolution, ecology, and conservation biology. Annu. Rev. Ecol. Evol. Syst. 36, 519-539. https://doi.org/10.1146/annurev.ecolsys.36.102803.095431. [120] Williams, J.W., Jackson, S.T., 2007. Novel climates, no-analog communities, and ecological surprises. Front. Ecol. Environ. 5, 475-482. https://doi.org/10.1890/070037. [121] Wing, S.L., Harrington, G.J., Smith, F.A., et al., 2005. Transient floral change and rapid global warming at the Paleocene-Eocene boundary. Science 310, 993-996. https://doi.org/10.1126/science.1116913. [122] Wolfe, J.A., 1975. Some aspects of plant geography of the Northern Hemisphere during the late Cretaceous and Tertiary. Ann. Mo. Bot. Gard. 62, 264-279. https://doi.org/10.2307/2395198. [123] Wutke, S., Blank, S.M., Boeve, J.L., et al., 2024. Phylogenomics and biogeography of sawflies and woodwasps (Hymenoptera, Symphyta). Mol. Phylogenet. Evol. 199, 108144. https://doi.org/10.1016/j.ympev.2024.108144. [124] Yan, Y., Davis, C.C., Dimitrov, D., et al., 2021. Phytogeographic history of the tea family inferred through high-resolution phylogeny and fossils. Syst. Biol. 70, 1256-1271. https://doi.org/10.1093/sysbio/syab042. [125] Yu, Y., Harris, A.J., Blair, C., et al., 2015. RASP (Reconstruct Ancestral State in Phylogenies): a tool for historical biogeography. Mol. Phylogenet. Evol. 87, 46-49. https://doi.org/10.1016/j.ympev.2015.03.008. [126] Zachos, J., Pagani, M., Sloan, L., et al., 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292, 686-693. https://doi.org/10.1126/science.1059412. [127] Zhang, N.N., Stull, G.W., Zhang, X.J., et al., 2025. PlastidHub: An integrated analysis platform for plastid phylogenomics and comparative genomics. Plant Divers. 47, 544-560. https://doi.org/10.1016/j.pld.2025.05.005. [128] Zhang, Q.Y., Deng, M., Bouchenak-Khelladi, Y., et al., 2021a. The diversification of the northern temperate woody flora-A case study of the Elm family (Ulmaceae) based on phylogenomic and paleobotanical evidence. J. Syst. Evol. 60, 728-746. https://doi.org/10.1111/jse.12720. [129] Zhang, Q.Y., Huang, J., Jia, L.B., et al., 2018. Miocene Ulmus fossil fruits from Southwest China and their evolutionary and biogeographic implications. Rev. Palaeobot. Palynology 259, 198-206. https://doi.org/10.1016/j.revpalbo.2018.10.007. [130] Zhang, Q.Y., Ree, R.H., Salamin, N., et al., 2021b. Fossil-informed models reveal a boreotropical origin and divergent evolutionary trajectories in the walnut family (Juglandaceae). Syst. Biol. 71, 242-258. https://doi.org/10.1093/sysbio/syab030. |
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