Plant Diversity ›› 2021, Vol. 43 ›› Issue (04): 299-307.DOI: 10.1016/j.pld.2020.11.001
• Articles • Previous Articles Next Articles
Gang Yaoa, Bine Xueb, Kun Liuc, Yuling Lia, Jiuxiang Huanga, Junwen Zhaid
Received:
2020-06-01
Revised:
2020-10-29
Online:
2021-09-07
Published:
2021-08-25
Contact:
Junwen Zhai
Supported by:
Gang Yaoa, Bine Xueb, Kun Liuc, Yuling Lia, Jiuxiang Huanga, Junwen Zhaid
通讯作者:
Junwen Zhai
基金资助:
Gang Yao, Bine Xue, Kun Liu, Yuling Li, Jiuxiang Huang, Junwen Zhai. Phylogenetic estimation and morphological evolution of Alsineae (Caryophyllaceae) shed new insight into the taxonomic status of the genus Pseudocerastium[J]. Plant Diversity, 2021, 43(04): 299-307.
Gang Yao, Bine Xue, Kun Liu, Yuling Li, Jiuxiang Huang, Junwen Zhai. Phylogenetic estimation and morphological evolution of Alsineae (Caryophyllaceae) shed new insight into the taxonomic status of the genus Pseudocerastium[J]. Plant Diversity, 2021, 43(04): 299-307.
Dillenberger, M.S., Kadereit, J.W., 2014. Maximum polyphyly:Multiple origins and delimitation with plesiomorphic characters require a new circumscription of Minuartia (Caryophyllaceae). Taxon 63, 64-88. Greenberg, A.K., Donoghue, M.J., 2011. Molecular systematics and character evolution in Caryophyllaceae. Taxon 60, 1637-1652. Harbaugh, D.T., Nepokroeff, M., Rabeler, R.K., et al., 2010. A new lineage-based tribal classification of the family Caryophyllaceae. Int. J. Plant Sci. 171, 185-198. Hernandez-Ledesma, P., Berendsohn, W.G., Borsch, T., et al., 2015. A taxonomic backbone for the global synthesis of species diversity in the angiosperm order Caryophyllales. Willdenowia 45, 281-383. Jin, J.J., Yu, W.B., Yang, J.B., et al., 2020. GetOrganelle:a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21, 241. https://doi.org/10.1186/s13059-020-02154-5 Ke, P., 1996. Cerastium. In:Tang CL (ed.) Flora Reipublicae Popularis Sinicae 26. Science Press, Beijing, 76-93. Li, Y.L., Huang, J.X., Yao, G., 2019. Characterization of the complete plastid genome of Psammosilene tunicoides (Caryophyllaceae), and endangered medical herb endemic to south-western China. Mitochondrial DNA B. 4, 2798-2799. Lu, D.Q., Wu, Z.Y., Zhou, L.H., et al., 2001. Caryophyllaceae. In:Wu ZY, Raven PH (eds) Flora of China 6. Science Press & Missouri Botanical Garden Press, Beijing & St. Louis, 1-113. Maddison, W.P., Maddison, D.R., 2014. Mesquite:Amodular System for Evolutionary Analysis. Version 3.01. http://mesquiteproject.org. Miller, M.A., Pfeiffer, W., Schwartz, T., 2010. Creating the CIPRES Science Gateway for inference of large phylogenetics trees. In:Proceedings of the Gateway Computing Environments Workshop (GCE). New Orleans, LA, 1-8. Posada, D., 2008. JModelTest:phylogenetic model averaging. Mol. Biol. Evol. 25:1253-1256. Pusalkar, P.K., Singh, D.K., 2015. Taxonomic rearrangement of Arenaria (Caryophyllaceae) in Indian Western Himalaya. J. Jpn. Bot. 90, 77-91. Qu, X.J., Moore, M.J., Li, D.Z., et al., 2019. PGA:a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods 15, 50. Rambaut, A., Suchard, M.A., Drummond, A.J., 2014. Tracer v1.6. Available at:http://beast.bio.ed.ac.uk/Tracer. Ronquist, F., Huelsenbeck, J.P., 2003. MrBayes 3:Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574. Sadeghian, S., Zarre, S., Rabeler, R.K., et al., 2015. Molecular phylogenetic analysis of Arenaria (Caryophyllaceae:tribe Arenarieae) and its allies inferred from nuclear DNA internal transcribed spacer and plastid DNA rps16 sequences. Bot. J. Linn. Soc. 178, 648-669. Sharples, M.T., Tripp, E.A., 2019. Phylogenetic relationships within and delimitation of the cosmopolitan flowering plant genus Stellaria L. (Caryophyllaceae):core stars and fallen stars. Syst. Bot. 44, 857-876. Stamatakis, A., 2006. RAxML-VI-HPC:maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690. Tian, X., Luo, J., Wang, A., et al., 2011. On the origin of the woody buckwheat Fagopyrum tibeticum (=Parapteropyrum tibeticum) in the Qinghai-Tibetan Plateau. Mol. Phylogent. Evol. 61, 515-520. Wang, L.S., Jia, Y., Zhang, X.C., Qin, H.N., 2015. Overview of higher plant diversity in China. Biodiv. Sci. 23, 217-224. Wu, Z.Y., Sun, H., Zhou, Z.K., et al., 2005. Origin and differentiation of endemism in the flora of China. Acta Bot. Yunnan. 27, 577-604. Xie P, Tu T, Razafimandimbison SG, et al., 2014. Phylogenetic position of Guihaiothamnus (Rabiaceae):Its evolutionary and ecological implications. Mol. Phylogent. Evol. 78, 375-385. Xu, B., Luo, D., Li, Z.M., et al., 2019. Evolutionary radiations of cushion plants on the Qinghai-Tibet Plateau:Insights from molecular phylogenetic analysis of two subgenera of Arenaria and Thylacospermum (Caryophyllaceae). Taxon 68, 1003-1020. Yao, G., Jin, J.J., Li, H.T., et al., 2019. Plastid phylogenomic insights into the evolution of Caryophyllales. Mol. Phylogent. Evol. 134, 74-86. Yang, B., Li, L., Liu, J., et al., 2020. Plastome and phylogenetic relationship of the woody buckwheat Fagopyrum tibeticum in the Qinghai-Tibet Plateau. Plant Divers. https://doi.org/10.1016/j.pld.2020.10.001 Yu, S.X., Hao, G., Jin, X.F., 2016. Caryophyllaceae. In:Species Catalogue of China Vol. 1 Plants, Spermatophytes (VII), Angiosperms (Caryophyllaceae-Ericaceae). Science Press, Beijing, 1-33. Zeng, C.X., Hollingsworth, P.M., Yang, J., et al., 2018. Genome skimming herbarium specimens for DNA barcoding and phylogenomics. Plant Methods 14, 43. Zhang, M.L., Zeng, X.Q., Li, C., et al., 2017. Molecular phylogenetic analysis and character evolution in Pseudostellaria (Caryophyllaceae) and description of a new genus, Hartmaniella, in North America. Bot. J. Linn. Soc. 184, 444-456. Zhang, X.P., Guo, X.H., 1998. A new genus of Caryophyllaceae from China. Acta Bot. Yunnan. 20, 395-398. |
[1] | Xiao-Hua Lin (林晓华), Si-Yu Xie (解思宇), Dai-Kun Ma (马代锟), Shuai Liao (廖帅), Bin-Jie Ge (葛斌杰), Shi-Liang Zhou (周世良), Liang Zhao (赵亮), Chao Xu (徐超), De-Yuan Hong (洪德元), Bin-Bin Liu (刘彬彬). Phylogenomic insights into Adenophora and its allies (Campanulaceae): Revisiting generic delimitation and hybridization dynamics [J]. Plant Diversity, 2025, 47(04): 576-592. |
[2] | Zhi-Qiong Mo (莫智琼), Chao-Nan Fu (付超男), Alex D. Twyford, Pete M. Hollingsworth, Ting Zhang (张挺), Jun-Bo Yang (杨俊波), De-Zhu Li (李德铢), Lian-Ming Gao (高连明). Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genus Rhododendron [J]. Plant Diversity, 2025, 47(04): 593-603. |
[3] | Lang Li (李朗), Bing Liu (刘冰), Yu Song (宋钰), Hong-Hu Meng (孟宏虎), Xiu-Qin Ci (慈秀芹), John G. Conran, Rogier P.J. de Kok, Pedro Luís Rodrigues de Moraes, Jun-Wei Ye (叶俊伟), Yun-Hong Tan (谭运洪), Zhi-Fang Liu (刘志芳), Marlien van der Merwe, Henk van der Werff, Yong Yang (杨永), Jens G. Rohwer, Jie Li (李捷). Global advances in phylogeny, taxonomy and biogeography of Lauraceae [J]. Plant Diversity, 2025, 47(03): 341-364. |
[4] | Kai-Yun Chen, Jin-Dan Wang, Rui-Qi Xiang, Xue-Dan Yang, Quan-Zheng Yun, Yuan Huang, Hang Sun, Jia-Hui Chen. Backbone phylogeny of Salix based on genome skimming data [J]. Plant Diversity, 2025, 47(02): 178-188. |
[5] | Han-Ning Duan, Yin-Zi Jiang, Jun-Bo Yang, Jie Cai, Jian-Li Zhao, Lu Li, Xiang-Qin Yu. Skmer approach improves species discrimination in taxonomically problematic genus Schima (Theaceae) [J]. Plant Diversity, 2024, 46(06): 713-722. |
[6] | Yajun Wang, Hanchen Wang, Chao Ye, Zhiping Wang, Chongbo Ma, Dongliang Lin, Xiaohua Jin. Progress in systematics and biogeography of Orchidaceae [J]. Plant Diversity, 2024, 46(04): 425-434. |
[7] | Jun-Yi Zhang, Yue-Hong Cheng, Min Liao, Yu Feng, Sen-Long Jin, Ting-Mei He, Hai He, Bo Xu. A new infrageneric classification of Gastrochilus (Orchidaceae: Epidendroideae) based on molecular and morphological data [J]. Plant Diversity, 2024, 46(04): 435-447. |
[8] | Yue Zhao, Ya-Ping Chen, Bryan T. Drew, Fei Zhao, Maryam Almasi, Orzimat T. Turginov, Jin-Fei Xiao, Abdul G. Karimi, Yasaman Salmaki, Xiang-Qin Yu, Chun-Lei Xiang. Molecular phylogeny and taxonomy of Phlomoides (Lamiaceae subfamily Lamioideae) in China: Insights from molecular and morphological data [J]. Plant Diversity, 2024, 46(04): 462-475. |
[9] | Hai-Su Hu, Jiu-Yang Mao, Xue Wang, Yu-Ze Liang, Bei Jiang, De-Quan Zhang. Plastid phylogenomics and species discrimination in the “Chinese” clade of Roscoea (Zingiberaceae) [J]. Plant Diversity, 2023, 45(05): 523-534. |
[10] | Mei-Zhen Wang, Xiao-Kai Fan, Yong-Hua Zhang, Jing Wu, Li-Mi Mao, Sheng-Lu Zhang, Min-Qi Cai, Ming-Hong Li, Zhang-Shi-Chang Zhu, Ming-Shui Zhao, Lu-Xian Liu, Kenneth M. Cameron, Pan Li. Phylogenomics and integrative taxonomy reveal two new species of Amana (Liliaceae) [J]. Plant Diversity, 2023, 45(01): 54-68. |
[11] | Yao-Ke Li, Julian Harber, Chuan Peng, Zhi-Qiang Du, Yao-Wu Xing, Chih-Chieh Yu. Taxonomic synopsis of Berberis (Berberidaceae) from the northern Hengduan mountains region in China, with descriptions of seven new species [J]. Plant Diversity, 2022, 44(05): 505-517. |
[12] | Yong Yang, David Kay Ferguson, Bing Liu, Kang-Shan Mao, Lian-Ming Gao, Shou-Zhou Zhang, Tao Wan, Keith Rushforth, Zhi-Xiang Zhang. Recent advances on phylogenomics of gymnosperms and a new classification [J]. Plant Diversity, 2022, 44(04): 340-350. |
[13] | Jun-Hao Yu, Rui Zhang, Qiao-Ling Liu, Fa-Guo Wang, Xun-Lin Yu, Xi-Ling Dai, Yong-Bo Liu, Yue-Hong Yan. Ceratopteris chunii and Ceratopteris chingii (Pteridaceae), two new diploid species from China, based on morphological, cytological, and molecular data [J]. Plant Diversity, 2022, 44(03): 300-307. |
[14] | Zheng-Yu Zuo, Ting Zhao, Xin-Yu Du, Yun Xiong, Jin-Mei Lu, De-Zhu Li. A revision of Dryopteris sect. Diclisodon (Dryopteridaceae) based on morphological and molecular evidence with description of a new species [J]. Plant Diversity, 2022, 44(02): 181-190. |
[15] | Zhen-Yu Lv, Ziyoviddin Yusupov, Dai-Gui Zhang, Ya-Zhou Zhang, Xiao-Shuang Zhang, Nan Lin, Komiljon Tojibaev, Hang Sun, Tao Deng. Oreocharis xieyongii, an unusual new species of Gesneriaceae from western Hunan, China [J]. Plant Diversity, 2022, 44(02): 222-230. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||