整合生物学期刊网

Plant Diversity ›› 2006, Vol. 28 ›› Issue (04): 352-358.

• 研究论文 • 上一篇    下一篇

真双子叶基部类群十种植物的CHS基因家族成员分析

杨俊波; 杨汉奇; 李德铢; 李洪涛   

  1. 中国科学院昆明植物研究所生物多样性和生物地理学重点实验室
  • 收稿日期:2005-10-19 出版日期:2006-08-25 发布日期:2006-08-25
  • 通讯作者: 李德铢

An Analysis of CHS Gene Family for Some Basal Eudicots

YANG Jun-Bo;YANG Han-Qi; LI De-Zhu; LI Hong-Tao   

  1. Laboratory of Biodiversity and Biogeography , Kunming Institute of Botany , Chinese Academy of Sciences
  • Received:2005-10-19 Online:2006-08-25 Published:2006-08-25
  • Contact: LI De-Zhu

摘要:

用PCR 方法从目前极少被报道的真双子叶基部类群10 种植物的总DNA 中扩增出CHS 基因外显子2的部分序列进行分析, 经克隆后测序, 共得到26 个不同的片段。分析表明, 所有序列具有较高的同源性( > 70%) , 每种植物有2~4 个不同的拷贝, 在金鱼藻中发现有一个拷贝(CedeCHS3) 含有一段长29 个碱基的缺失, 可能已失去了该基因的功能, 而来自银桦的GrroCHS8 拷贝具有较多活性位点的变异, 可能具有了新的功能。在对碱基含量的分析中表明, 只有来自雀舌黄杨的序列有一定的GC 偏好, 特别是第三位的GC 含量达70%以上。用贝叶斯法、最大简约法和邻接法构建的CHS 基因的分子系统树均由3 个主要分支构成,其中一个分支由来自金鱼藻的4 个序列聚在一起构成了subfamilyⅡ, 来自昆栏树的2 个序列聚在一起网接于subfamily Ⅲ中; 来自独叶草的3 个序列分散于同一亚家族(subfamilyⅠ) 的不同分支中; 而多数种的序列分散在相距较远的两个分支中, 构成了两个主要的亚家族subfamilyⅠ、subfamily Ⅲ。从所建分子系统树看真双子叶基部类群植物的CHS 基因家族成员来源于该类群形成前的两个祖先拷贝, 在不同植物这两个祖先拷贝经历了不同的进化过程, 这些进化上的差异可能与不同植物的生活习性及生存环境的多样性相关。

关键词: 真双子叶基部类群, 查尔酮合酶基因家族, 进化, 重复FONT

Abstract: Partial sequences of chalcone synthase (CHS) gene exon 2 were amplified by PCR method from genomic DNA of 10 species of the basal eudicots. After cloning and sequencing , 26 seqences were obtained . There were two to four copies of CHS gene family among various plants. All of sequences showed a similarity higher than 70% at the nucleotide level . A 29-base deletion was found in a copy (CedeCHS3) in Ceratophyllum demersum, which indicated that the function of the CHS enzyme in this species was lost. GrroCHS8, a copy from Grevillea robusta, had many mutations at active sites, implying the new function may be devoloped in this copy. The result of analyzing the base content revealed that only the sequences from Buxus bobinieri have GC bias, especially at the third base of codes, and the GC content is more than 70%. All of molecular phylogenetic trees, based on the Beyesian, MP, and NJ methods, consisted of three major clades. Four sequences from Ceratophyllum demersum were grouped into a monophyletic clade (subfamily Ⅱ ). Two sequences out of Trochodendron aralioides nested in subfamily Ⅲ. Another three sequences from Kingdonia uniflora interspersed among different subclades of subfamily Ⅰ. Sequences of most species dispersed in subfamily Ⅰ and subfamily Ⅲ. And it revealed that CHS gene family derived from two ancestor copies, which had existed before eudicots were evolved. The two copies experienced different evolutionary process among different species . These differences related to the diversity of habits and environments of these plants.

Key words: Basal eudicots

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