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Application of large language models in biodiversity research
Jiqi Gu, Jianping Chen, Jiangshan Lai
Biodiv Sci    2024, 32 (9): 24258.   DOI: 10.17520/biods.2024258
Accepted: 09 August 2024

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Background & Aims: With the development and advancement of artificial intelligence technology, large language models (LLMs), such as Kimi Chat, have begun to play a significant role in biodiversity research. LLMs’s deep learning and natural language processing technologies, augmented by human feedback reinforced learning (RLHF) and proximal policy optimization (PPO), offer new avenues for handling and analyzing large biodiversity data sets.
Progresses: We explore the application of LLMs, taking Kimi Chat as an example, in investigating biodiversity research questions, reviewing literature, designing hypotheses, organizing and analyzing data, and writing research papers, as well as its potential to enhance research efficiency and quality. (1) LLMs can quickly process vast amounts of scientific literature, helping researchers distill key information and swiftly catch up with the latest research trends in specific fields. (2) LLMs can also assist researchers in formulating research hypotheses and designing experimental protocols, thereby providing abundant scientific inspiration, broadening research perspectives, and enhancing the efficiency of the initial stages of research. (3) In terms of research design, LLMs can offer advice on data collection methods, design of experiment, and statistical analyses to ensure the scientific validity and the logic of the research design. (4) LLMs can assist in scientific writing and peer review processes by helping draft scientific papers and providing suggestions for revision and polishing to enhance the quality and readability of the papers, and it also supports researchers in understanding and responding to peer review comments and optimizing the presentation of research findings. We also discuss the challenges and limitations encountered during using LLMs, such as the need for professional judgment, the homogenization of research methods, the accuracy of data and results, and ethical issues. Additionally, we propose strategies for integrating this technology with traditional biodiversity research methods in the future.
Prospects: We demonstrates how LLMs can aid in biodiversity research, thus advancing scientific discovery and ecological conservation strategies.

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Study advances on the mechanism of soil microbial carbon fixation and associated influencing factors
GUO Qiang, HAN Zi-Chen, XIA Yun, YANG Liu-Ming, FAN Yue-Xin, YANG Yu-Sheng
Chin J Plant Ecol    2024, 48 (11): 1406-1421.   DOI: 10.17521/cjpe.2023.0379
Accepted: 16 July 2024

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Soil microorganisms are key drivers of carbon (C) cycling in terrestrial ecosystems not only by facilitating soil organic C decomposition and CO2 emission, but sequestering atmospheric CO2 into soil organic C through microbial C fixation. Due to the ubiquitous presence of microorganisms in soils, microbial C fixation is vital for terrestrial ecosystem C cycle globally. In this paper, we explored the mechanisms and determinants of soil microbial C fixation based on data collections and analyses to address the following the three issues: 1) the pathways and processes of autotrophic microbial C fixation in soil; 2) the pathways and processes of heterotrophic microbial C fixation in soil; and 3) the impacts of soil properties, ecosystem types, and climate change (i.e., warming and precipitation change) on microbial C fixation. Overall, the paper provides insights into the dynamics of C fixation in terrestrial ecosystems which is helpful for better understanding the uncertainty of soil C pool in the relationship to microbial C fixation, and which also lays a theoretical foundation for advancing of C cycling models under climate change.

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The status and distribution pattern of fish diversity in the Yarlung Tsangpo River
Dekui He, Jinnan Chen, Liuyong Ding, Yiyang Xu, Junhao Huang, Xiaoyun Sui
Biodiv Sci    2024, 32 (11): 24143.   DOI: 10.17520/biods.2024143
Accepted: 11 August 2024

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Aims: The Yarlung Tsangpo River, one of the ten longest rivers in China, spans two major zoogeographic regions of the world: The Palearctic and the Oriental realms. While previous papers have focused on small portions of the river, a basin-wide-scale study to catalog its fish composition, diversity patterns, and species fluctuation is lacking. This study synthesized empirical data from field studies over the past two decades on fish diversity in the Yarlung Tsangpo River, compiled a list of fish diversity in the Yarlung Tsangpo River Basin in China, and analyzed the status of the fish diversity and the main threats to its diversity. The findings provide a scientific foundation for management and conservation of fish diversity in the Yarlung Tsangpo River Basin.

Methods: In total, 66 sections were included in this study. Of them, 58 were actually surveyed in the field, and 8 were collected from literatures; two in the upper reaches, 40 in the middle reaches, and 24 in the lower reaches; 24 in the main stream, 33 in the tributaries, 2 in the lakes, 3 in the tributary reservoirs, and 4 wetlands. These sampling sections (locations) were selected according to their geomorphological characteristics, as well as the accessibility of each location for sampling. The fish investgations were conducted from 2004 to 2023. Methods for collecting fishes included gillnets, shrimp coops, and battery-powered backpack electrofisher. After compiling the data from all of the sites, the degree of endemicity was calculated using the corrected weighted endemism index.

Results: There are 155 native species in 10 orders, 25 families, and 70 genera in the Yarlung Tsangpo River Basin. Out of all of the detected species, 29 species and one genus are endemic to the river. Five species were on China’s Key Protected Species List (Grade II); and 26 species were categorised as threatened (i.e. endangered, vulnerable, or near threatened) on the IUCN Red List of Threatened Species and China’s Biodiversity Red List. The sections with high species richness are located in the middle and lower reaches of the Yarlung Tsangpo River, while the lowest species richness is found in the Great Canyon sections. Fish fauna of the river is dominated by Qinghai-Tibetan Plateau, and South Asian fishes. The Jiaresa-Bangxin section of the Yarlung Tsangpo River Grand Canyon may be the boundary between the two major zoogeographical regions of freshwater fish. By the end of 2023, 30 species of non-native fish in 8 orders, 16 families, and 24 genera had been recorded in the natural water bodies of the Yarlung Tsangpo River Basin. Of these non-native fish species, three species were introduced to different regions within the Yarlung Tsangpo River Basin. In recent years, there has been a rapid increase in the introduction of both native fishes and non-native cold-adapted fishes through the plateau’s drainage systems.

Conclusion: Through cataloging the fish diversity in the Yarlung Tsangpo River Basin, we found that invasion of non-native fishes is the main threat to fish diversity. In the future, we should focus on fish surveys of lakes and tributaries in the lower reaches of the river, strengthen the resources for data integration, and establish a basin-level data management platform. Further, taxonomic research should be strengthened through international cooperation. Additionally, long-term monitoring of fish resources should be implemented as soon as possible to monitor fish diversity and promote conservation in the Yarlung Tsangpo River.

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Advances in the role of plant diversity in soil organic carbon content and stability
ZHANG Jia-Rui, DUAN Xiao-Yang, LAN Tian-Xiang, SURIGAOGE Surigaoge, LIU Lin, GUO Zhong-Yang, LÜ Hao-Ran, ZHANG Wei-Ping, LI Long
Chin J Plant Ecol    2024, 48 (11): 1393-1405.   DOI: 10.17521/cjpe.2023.0370
Accepted: 17 June 2024

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Soil organic carbon (SOC) is an important carbon (C) pool in terrestrial ecosystems. Pant diversity can enhance SOC content in forests, grasslands, and agricultural ecosystems, and its potential effects on the composition and stability of SOC have aroused increasing interest. However, there is no systematic review of their underlying mechanisms. The present study therefore summarizes advances in research on the effects of plant diversity on the content, composition and stability of SOC and the underlying mechanism with the aim of providing a scientific basis for maximizing soil carbon and nitrogen (N) sequestration and mitigating global climate change through the promotion of plant diversity. Increasing plant diversity can increase the inputs of plant litter biomass into soils, enhance the quality of mixed litter (e.g., lower C:N), and promote the turnover and accumulation of SOC. It can also increase plant-derived C via root and litter inputs to soils, or increase microbe-derived C via enhanced microbial turnover. These processes can also increase soil particulate organic carbon (POC) and mineral associated organic carbon (MAOC) contents. In addition, increasing plant diversity can increase the stability of soil organic carbon by enhancing aggregate protection, changing mineral ion concentrations, and changing microbial community structure. Future studies are needed to investigate (1) how soil organic carbon content may be increased through integrated plant diversity and management options; (2) how the effects of plant diversity on soil organic carbon content and composition can be explored through long-term plant diversity field experiments in different ecosystems; (3) how the effects of plant diversity on soil organic carbon composition and stability can be examined using new experimental methods(e.g., isotope labeling); and (4) how the mechanisms underlying plant diversity effects on soil carbon content, composition and stability can be studied at different soil depths.

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Suggestions on standardizing the use of Chinese and Latin names for domestic animals and their wild relatives
Xie Linzhe, Peng Minsheng, Han Jianlin, Fang Meiying, Lü Fenghua, Chen Ningbo, Wang Guodong, Li Gang, Yin Tingting
Biodiv Sci    2025, 33 (4): 24293.   DOI: 10.17520/biods.2024293
Accepted: 08 December 2024

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Background & Aim: Domestic animals and their wild relatives are important biological resources crucial to the creation of new breeds, germplasm innovation and wildlife protection. China has abundant and unique domestic breeds and is one of the distributions of many wild relatives and the origin centers of animal domestication. The confusion in the usage of Chinese and Latin names for domestic animals and their wild relatives hinders the accurate identification of biological resources, impairs effective scientific research communication and science popularization, and contributes to the loss of vital biological resources.

Methods: We search online resources and official documents such as the List of State Key Protected Wild Animals (2021), threatened species listed on China’s Red List (2021), Convention on International Trade in Endangered Species of Wild Fauna and Flora (2023) among others. This information is used to investigate the history and origin of domesticating animals and the sources and use of names for domestic animals and their wild relatives in Chinese, English, and Latin languages.

Conclusion & Suggestions: We find four key principles: (1) The Latin names of domestic animals and wild relatives must consider their origin and domestication history. (2) The Chinese names of domestic animals and wild relatives should conform to the rules of taxonomy, using the names of official documents or related monographs is recommended. (3) The Latin name of offspring produced by the hybridization of species should be expressed by the Latin scientific name of the parent, and the order of the Latin name should be distinguished from the orthogonal or inverse cross. (4) International conventions, national laws and regulations, scientific reports, and other official documents shall be used first according to context.

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Population status and habitat of Critically Endangered Jiangxi giant salamander (Andrias jiangxiensis)
Yi Murong, Lu Ping, Peng Yong, Tang Yong, Xu Jiuheng, Yin Haoping, Zhang Luyang, Weng Xiaodong, Di Mingxiao, Lei Juan, Lu Chenqi, Cao Rujun, Dai Nianhua, Zhan Deyang, Tong Mei, Lou Zhiming, Ding Yonggang, Chai Jing, Che Jing
Biodiv Sci    2025, 33 (4): 24145.   DOI: 10.17520/biods.2024145
Accepted: 18 September 2024

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Aims:In order to support conservation efforts for the endangered Jiangxi giant salamander (Andrias jiangxiensis), we conducted a comprehensive long-term field monitoring project to assess population dynamics, species distribution, and potential threats to the species. The findings from this study will serve as guidance for the development and implementation of conservation initiatives for this endangered species.

Methods:In this study we established long-term monitoring of both population ecology and habitat of the wild population of the Jiangxi giant salamander in the Jinjia tributary of the Beiliao River from 2021 to 2023. The population status was evaluated using the mark-and-recapture method which allowed us to gather essential data on population characteristics, life history, habitat condition.

Results:A total of 628 adult and juvenile Jiangxi giant salamanders were successfully captured. Among them, 543 were tagged with passive integrated transponder (PIT) tags, and 230 were recaptured at least once. Using the Schnabel model for estimating population size from mark-and-recapture, the population size was estimated to be 474 individuals (95% CI: 427-534). The calculated population density was 79 inds./km (95% CI: 71-89) or 1.31 inds./100 m2 (95% CI: 1.19-1.48). An analysis of population structure indicated that few individuals had a body size smaller than 30 cm or larger than 70 cm. During the three consecutive years from 2021 to 2023, a total of 738 larvae were observed between January and March, a time of the year when the newly hatched larvae swim out of their breeding cave and begin to forage. In contrast, only 12 larvae were seen across the whole habitat range between April and December, with an extremely low catch per unit effort (CPUE) (0.38 inds.∙person-1∙h-1). Our observations indicate that larvae of the Jiangxi giant salamander face challenges from both predators and environmental factors, leading to a low survival rate in their natural habitat. Habitat assessments have revealed significant threats to the isolated population of this species, including environmental fluctuations such as floods and perturbations of water flow, which pose a risk to their survival.

Conclusion:This study recommends the evaluation of the Jiangxi giant salamander as Critically Endangered (CR) and a National Class I Protected species. Consequently, we urge the implementation of specific conservation actions.

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Genomic resequencing reveals the genetic diversity of the cultivated water caltrop, and the origin and domestication of ‘Nanhuling’
Xiangtan Yao, Xinyi Zhang, Yang Chen, Ye Yuan, Wangda Cheng, Tianrui Wang, Yingxiong Qiu
Biodiv Sci    2024, 32 (9): 24212.   DOI: 10.17520/biods.2024212
Accepted: 02 September 2024

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Aims: Understanding the origins and domestication processes of cultivated crops, is crucial for understanding human civilization. Trapa, commonly known as water caltrop, belongs to the family Lythraceae and is an annual floating-leaf aquatic herb. As a traditional aquatic vegetable crop, the fruit of Trapa has long been a significant food source in early Chinese agricultural societies. However, in recent years, rapid urbanization in China has resulted in habitat destruction, posing a serious threat to its genetic diversity. Moreover, ‘Nanhuling’, a major cultivar of Trapa, holds high economic and cultural value, yet its origin and domestication history are not fully understood.
Methods: In this study, we employed population genomics to investigate the genetic diversity of cultivated water caltrop and the domestication history of ‘Nanhuling’. The dataset for this study was generated by whole-genome resequencing of 31 diploid cultivated T. natans and 23 diploid wild T. natans samples.
Results: Population genetic structure and differentiation indicated that wild and cultivated T. natans belonged to distinct gene pools. Cultivated T. natans originated from the diploid wild T. natans in the Yangtze River Basin. The overall genetic diversity level of cultivated T. natans is lower than that of wild T. natans (0.68 × 10−3 vs. 1.35 × 10−3), and the effective population size is significantly reduced compared to wild T. natans (~4,000 vs. ~7,700), suggesting that cultivated T. natans experienced a genetic bottleneck during domestication. Among cultivated T. natans, ‘Nanhuling’ exhibited the lowest level of genetic diversity and the slowest decay rate of linkage disequilibrium, which may be related to its high degree of domestication and strong selection pressure. Based on the population dynamic history inferred from the FASTSIMCOAL2 ancestral simulation model, we found that there had been gene flow events among ‘Nanhuling’, ‘Wuling’, and other cultivated T. natans. The domestication of ‘Nanhuling’ occurred approximately 669 years ago, consistent with literary records from the Ming Dynasty.
Conclusions: This study is significant as it deepens our understanding of the domestication and genetic evolution of cultivated T. natans. Insights gained from this work may help improve agriculturally valuable characteristics of T. natans, such as crop yields and nutrient content.

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Global new taxa of vascular plants published in 2023
Xia Wan, Li-Bing Zhang
Biodiv Sci    2024, 32 (11): 24322.   DOI: 10.17520/biods.2024322
Accepted: 30 December 2024

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Aims: Due to the application of new technologies, more extensive field surveys, and data sharing, researchers are continuously discovering and describing new plant species, leading to a constant increase in the number of known plant species worldwide. Annual analysis of the published data of new vascular plant taxa not only enriches our understanding of plant diversity but also provides a crucial foundation for biodiversity conservation and sustainable development.

Methods: The data were derived from the IPNI (https://www.ipni.org/), Tropicos (https://www.tropicos.org/), and WCSP (https://wcsp.science.kew.org/). Statistics of new taxa of vascular plants published in 2023 were available as of April 30, 2024 excluding new combinations, new statuses or new names and bryophyte data.

Results: In 2023, at least 2,316 new taxa of vascular plants (based on data available as of April 30, 2024; the final number will increase by ca. 20% and to ca. 2,900) were described worldwide, including 1 new family, 11 new subfamily, 4 new supertribes, 7 new tribes, 3 new subtribes, 102 new genera, 9 new subgenera, 41 new sections, 8 new subsections, 5 new series, 1,967 new species, 79 new subspecies, 67 new varieties, and 12 new forms. These new taxa belonged to 162 families and 914 genera, among which Orchidaceae, Asteraceae, and Rubiaceae were the top three families with the most new taxa described. The 2,316 new taxa of vascular plants were described worldwide in 192 journals and 12 books by 1,983 scholars, of which 60 authors published more than 10 new taxa. Phytotaxa and PhytoKeys were the top two journals in terms of the numbers of new taxa of vascular plants published in 2023 and published 526 and 182 new taxa, respectively. Among the 2,125 new species and infraspecific taxa, 2,061 belonged to angiosperms, 58 to lycophytes and pteridophytes, and only 6 to gymnosperms, and 254 to Orchidaceae alone. The 2,125 new species and infraspecific taxa were from 115 countries and regions. Asia and South America were the hotspots of discoveries of new species and infraspecific taxa, with 873 and 506, respectively. By country, China, Brazil, and Mexico were the top three with the most new species and infraspecific taxa discovered in 2023, with 207, 197, and 116, respectively.

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Advances in Identification and Synthesis of Promoter Elements in Higher Plants
Xiang Song, Luyao Wang, Boxiao Fu, Shuangda Li, Yuanyuan Wei, Yan Hong, Silan Dai
Chinese Bulletin of Botany    2024, 59 (5): 691-708.   DOI: 10.11983/CBB23171
Accepted: 25 March 2024

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Promoter is an indispensable regulatory sequence for driving gene expression in higher plants. Different promoter elements cause diverse driving efficiency and space-time specificity. Identifying the structures and functions of promoter elements contributes to a better understanding of the growth and development, multi-stress tolerance, and evolution of plants. With the development of high-throughput sequencing technologies, artificial intelligence and synthetic biology, the techniques for identifying cis-acting elements and constructing artificial biological components that meet the design requirements has gradually emerged, providing a foundation for efficient, precise, and diverse gene regulation in molecular breeding. This article targets on the application of promoter reconstruction in molecular design, introducing the detailed structure and function of higher plant promoters and the methods of cis-acting element identification. We summarized a total of 174 inducible, tissue-specific promoter elements in 27 categories and their applications on artificial modification and synthesis. At the end, we proposed the future directions and methods of the promoter designs. This review will be helpful for the further functional analyses of promoters in higher plants and their applications on molecular design breeding.

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Applications of passive acoustic monitoring and evaluation in urban bird research
Zezhou Hao, Chengyun Zhang, Le Li, Bingtao Gao, Wei Zeng, Chun Wang, Zixuan Wang, Wantao Huang, Yue Zhang, Nancai Pei, Zhishu Xiao
Biodiv Sci    2024, 32 (10): 24123.   DOI: 10.17520/biods.2024123
Accepted: 08 September 2024

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Background & Aims: Rapid urbanization has proved the importance of effectively monitoring and evaluating urban bird diversity, making it a crucial area of technique inquiry within urban ecology and biodiversity conservation. Passive acoustic monitoring (PAM), a technique that utilizes the environment to assess biodiversity, provides long-term and continuous data on urban avian population dynamics. This approach offers valuable insights into the influence of human activities on natural habitats. Although PAM technology has been adopted globally for urban biodiversity monitoring and has resulted in extensive acoustic datasets, variations in monitoring and assessment methodologies show significant challenges in effectively evaluating urban avian diversity.

Review Results: We synthesize representative cases of urban avian diversity research conducted using PAM technology, focusing on aspects such as spatio-temporal experimental design, recording device parameters, and quantification techniques of acoustic signals. The results indicate that current case studies exhibit general routines in experimental frameworks, parameter selection, and quantification methods. However, variability in monitoring and evaluation technologies, along with their effects on factors such as signal-to-noise ratio and representativeness of sound signals, remains a significant challenge that hinders the application of PAM in urban bird diversity research, yet this issue has not received adequate attention. Therefore, this paper advocates for a comprehensive examination of passive acoustic monitoring and evaluation techniques for urban bird sounds, which would facilitate the creation of eco-acoustic big data and address broader ecological questions.

Perspectives: Given the increasing prevalence of PAM applications, there is an urgent need for the development of technical standards for passive acoustic monitoring and evaluation of urban birdsong. Establishing these standards would promote the standardization of sound data collection and analysis, leading to the creation of a comprehensive urban bird sound database. Such advancements would enable the utilization of big data to elucidate the impacts of urbanization on birdsong diversity and response mechanisms, thereby enriching urban avian studies and supporting biodiversity conservation efforts in urban environments. This paper summarizes current monitoring schemes and technological applications, providing a foundation for future theoretical frameworks. Methodological approaches and technological implementations are proposed for future passive acoustic monitoring and evaluation of urban bird diversity in China.

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Achievements and Advances of Plant Sciences Research in China in 2024
Hongya Gu, Fan Chen, Rongcheng Lin, Xiaoquan Qi, Shuhua Yang, Zhiduan Chen, Xuewei Chen, Zhaojun Ding, Langtao Xiao, Jianru Zuo, Liwen Jiang, Yongfei Bai, Kang Chong, Lei Wang
Chinese Bulletin of Botany    2025, 60 (2): 151-171.   DOI: 10.11983/CBB25036
Accepted: 21 March 2025

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In 2024, the numbers of original research articles published by Chinese plant scientists in mainstream plant science journals increased significantly compared with that in 2023, and important advances have been made in the fields of plant hormone regulation, pathology, synthetic biology, stress resistance mechanism, phylogenetics and genomics. Among them, “Characterization and Heterologous Reconstitution of Taxus Biosynthetic Enzymes Leading to Baccatin III”, and “Reciprocal Conversion Between Annual and Polycarpic Perennial Flowering Behavior in the Brassicaceae” were selected as two of the “Top Ten Advances in Life Sciences in China” in 2024. Here we summarize the achievements of plant science research in China in 2024, by briefly introducing 50 representative important research advances, so as to help readers understand the trend of plant science development in China, and evaluate future research direction to meet major national strategic needs.

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A database of life-history, ecological, and biogeographical traits of snakes worldwide
Zhao Yifan, Wang Yanping
Biodiv Sci    2025, 33 (2): 24476.   DOI: 10.17520/biods.2024476
Accepted: 13 March 2025

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The inherent ecological and life-history characteristics of organisms are fundamental in determining species population dynamics and survive strategies, as well as their ability to adapt to environmental changes. Snakes are a group of vertebrates with a high degree of morphological specialization. However, due to the cryptic nature of snakes and their solitary behavior, life-history and ecological studies on snakes remain relatively lagged compared with other vertebrate groups, and no comprehensive trait database specifically dedicated to snakes has been available. This study collected and compiled 28 traits of 4,145 snake species by systematically consulting published snake books, peer-reviewed and non-peer-reviewed literature, online databases and other data resources. These traits include life-history traits (8 traits including body mass, total length, prey), ecological traits (7 traits including distribution, microhabitat, elevational distribution), and biogeographical traits (13 traits including annual mean temperature, annual mean precipitation, normalized difference vegetation index (NDVI)). The data completeness of these traits ranged from 42.41% to 99.90%. Compared to other datasets, this dataset has the most complete number of species, the richest traits, and offers higher completeness for some traits. As the most comprehensive and up-to-date global trait dataset for snakes, it provides valuable data support for research in ecology, biogeography and conservation biology of snakes at both global and region scales.

Database/Dataset Profile

Title A database of life-history, ecological, and biogeographical traits of snakes worldwide
Data author(s) Yifan Zhao, Yanping Wang
Data corresponding author Yanping Wang (wangyanping@njnu.edu.cn)
Time range Until September 6th, 2024
Geographical scope Global
File size 1.7 MB
Data format *.xlsx
Data link https://doi.org/10.57760/sciencedb.16435
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024476.zip
Database/Dataset composition The dataset provided in this study consists of one subset and two descriptive files in total. It comprises 28 distinct life-history, ecological, and biogeographical traits, covering all 4,145 snake species around the world.
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New vertebrate species discovered in China in 2023
Jianping Jiang, Bo Cai, Bin Wang, Weitao Chen, Zhixin Wen, Dezhi Zhang, Lulu Sui, Shun Ma, Weibo Wang
Biodiv Sci    2024, 32 (11): 24327.   DOI: 10.17520/biods.2024327
Accepted: 09 December 2024

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Aim: To collate and report new vertebrate species discovered in China in 2023.

Method: This paper summarizes the basic information about discoveries of vertebrate species from academic literature published in 2023, including 73 citations.

Results: In 2023, 93 vertebrate species were discovered in China, including 69 species new to science, 15 species not previously reported in China, and 9 valid species that were upgraded from subspecies. These species belong to 14 orders, 40 families, and 61 genera. Among them, there are 18 new species of fish; 31 species of amphibian, including 23 new species and 8 newly recorded in China; 22 species of reptile, including 21 new species and 1 newly recorded in China; 10 species of bird, including 4 species upgraded from subspecies and 6 newly recorded in China; 12 species of mammal, including 7 new species, 1 newly recorded in China, and 4 species upgraded from subspecies. Ectotherm vertebrates account for 76% of new discoveries; most of the fishes, amphibians, reptiles, and birds were species of Cypriniformes (15/18), Anura (27/31), Squamata (21/22), and Passeriformes (8/10), respectively, while most of mammals were species of Eulipotyphla (6/12) or Rodentia (5/12). These 93 newly discovered vertebrates were recorded in 21 provincial regions. Of these species, 79 were recorded in only one provincial region, while there were 29, 13, 10, 10, and 9 new species recorded in Yunnan, Xizang, Guangxi, Sichuan, and Guizhou, respectively. A total of 79 of these discovered species have been supported by molecular systematics. There were 82 species published in academic journals, 14 of which were published in two English journals in China and 3 of which were published in two Chinese journals.

Conclusion: This article provides basic information needed for the classification and protection of vertebrate species in China. In addition, it indicates that ectotherm vertebrates may be the hot group of vertebrate species studied in diversity research in China, and an integrated classification approach is essential to support future taxonomic studies.

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Elevational gradient pattern of woody plant community structure and diversity in the Qinling Mountains
Fangfang Wu, Na Liu, Chunmei He, Zuoqiang Yuan, Zhanqing Hao, Qiulong Yin
Biodiv Sci    2024, 32 (12): 24239.   DOI: 10.17520/biods.2024239
Accepted: 28 December 2024

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Aims: Plant community structure and diversity patterns research is valuable for revealing the mechanism of biodiversity maintenance. The Qinling Mountains are in the transition zone at the north-south climate dividing line where the flora and fauna meet. This region is an important platform for studying the plant community structure and diversity distribution pattern in the transition zone.

Methods: According to standards of Center for Tropical Forest Science (CTFS), the Smithson Institute for Tropical Research, we establish ten 1 ha (100 m × 100 m) long-term positional monitoring plots from 800 m to 2,600 m in the middle part of the southern slope of the Qinling Mountains. We conduct community surveys using our plots with the Qinling Huangguan forest plot as the core. Initially, we analyze the elevation gradient pattern of the species composition, systematic characters, diameter class structure, spatial distribution of dominant species, and species diversity of woody plants with diameter at breast height (DBH) ≥ 1 cm.

Results: (1) We investigate a total of 208 seed plant species belonging to 50 families and 109 genera. The genera in the temperate zone account for 69.7% of the total number of genera, and the temperate zone is obvious. With increasing elevation, rare and occasional species and the composition of families, genera and species of the plant community show a unimodal pattern of increasing first and then decreasing. The dominant species of the community has obvious turnover along the elevational gradient, and the middle elevation shows the transitional nature of broad-leaved oak and coniferous fir forests. (2) The overall structure of DBH size class of all woody plant individuals generally shows an inverse “J” type. In terms of elevation, except for the bimodal distribution of woody plants at 1,600 m and 2,000 m, the rest of the elevation showed an inverted “J” shape, and the community structure is generally more stable. The spatial point pattern of dominant species at different elevations shows an aggregated distribution within the 1-10 m scale, which gradually changes to random and uniform distribution as the scale increased. With increasing elevation and removal of habitat heterogeneity, the scale range of aggregated distributions decreases and the scale range of random distributions increases. (3) In increasing elevation species richness shows a significant unimodal distribution pattern with the peak occurring between 1,200 m and 1,400 m. Changes in Shannon-Wiener diversity index, Simpson dominance index, Pielou evenness index along the elevational gradient shows a significant bimodal pattern, with both peaks occurring in 1,000-1,200 m, and 2,000-2,200 m. β diversity (Bray-Curtis index and Jaccard index) shows a unimodal trend along the elevational gradient.

Conclusion: Our study forms the foundation for the construction of long-term monitoring and a basic database of forests in the subtropical-warm temperate transition zone. This research provides a theoretical basis for the conservation of biodiversity in this transition zone and for sustainable forest management.

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Advances in the Regulation of Alternative Splicing of Genes in Plants in Response to Abiotic Stress
Xiong Lianglin, Liang Guolu, Guo Qigao, Jing Danlong
Chinese Bulletin of Botany    2025, 60 (3): 435-448.   DOI: 10.11983/CBB24189
Accepted: 26 February 2025

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The external environment severely affects growth and development of plants. In recent years, the increasing extreme climates have posed a serious threat to the growth and development of plants. Understanding the regulatory mechanisms of plant stress tolerance is of great significance for ensuring the survival and development of plants (especially economic crops) and their yields. Alternative splicing is an important post-transcriptional regulatory mechanism and plays an important role in the diversity of plant gene functions and stress resistance. At present, a variety of alternative splicing variants of stress-resistant related genes have been identified in different plant species, and several regulatory mechanisms involved in alternative splicing have been elucidated, effectively advancing the relevant theoretical basis for plant stress resistance in plants. This paper reviews the types and splicing mechanisms of alternative splicing in plants, highlights the recent progress in alternative splicing regulation of plant responses to abiotic stress, and provides a prospect for the future direction of research on alternative splicing in plants.

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New taxa of extant spiders (Araneae) from the world in 2023
Xinyu Li, Yaxuan Zhang, Meichen Yan, Ruihan Yang, Xiaoqing Zhang, Zhiyuan Yao
Biodiv Sci    2024, 32 (11): 24181.   DOI: 10.17520/biods.2024181
Accepted: 11 July 2024

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Aim: This paper focuses on the advancements in taxonomic studies of extant spiders in 2023 worldwide, with detailed statistical analyses of new taxa, type localities, arachnologists conducting such research, and journals publishing these works.

Progress: A total of 1,311 new taxa were described in 2023, including 1 new family, 70 new genera and 1,240 new species. They belong to 71 families, with type localities spanning across 75 countries and jurisdictions. The new taxa were documented by 344 arachnologists in 315 papers, published in 63 different journals. Out of these 315 papers, 52 (16.5%) comprised revisions of selected higher taxa (at family and genus levels), regional studies, and monographs. The proportion of papers incorporating DNA analyses made up 16.8% (totaling 53 papers). Among the 1,240 new species, 740 new species were published based on both male and female specimens, accounting for 59.7% of the total, and 500 new species only published based on male or female specimens, accounting for 40.3%. China is the country with the highest number of new species discovered, a total of 412, accounting for 33.2% of the global tally. With as many as 94 arachnologists naming new spider taxa, China becomes the country with the highest number of publishing spider taxonomists, accounting for 27.3% of the world’s total. Among them, the most prolific arachnologist is Shuqiang Li, who described a total of 171 new taxa, comprising 13.0% of the worldwide total for 2023. Altogether, Li and the other 93 Chinese colleagues described a total of 540 new taxa, comprising 33 new genera and 507 new species from China, Vietnam, and the other nine countries and jurisdictions. These new taxa described by Chinese arachnologists made up 41.2% of the 2023 global aggregate, higher than the Chinese output in 2022 (37.0%), 2021 (33.8%) and during the 2016-2020 period (28.1% on average).

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Advances and prospects in research on other effective area-based conservation measures (OECMs)
Zhao Weiyang, Wang Wei, Ma Bingran
Biodiv Sci    2025, 33 (3): 24525.   DOI: 10.17520/biods.2024525
Accepted: 04 March 2025

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Aims: Other effective area-based conservation measures (OECMs) are becoming an essential complement to the traditional system of protected areas, playing a critical role in global biodiversity conservation. This study aims to provide a comprehensive analysis of the development trajectory and current research on OECMs, focusing particularly on their advancements and unique characteristics in China. It further explores the future prospects of OECMs in China under the Kunming-Montreal Global Biodiversity Framework.
Progress: In recent years, the continuous policy advancements regarding OECMs worldwide underscore the international community’s recognition of their significant role as a supplementary tool in global biodiversity conservation strategies. From conceptualization to practical implementation, OECMs have undergone a process of deepening and refinement, emerging as a key mechanism for addressing biodiversity loss and ecosystem degradation. Globally, systematic studies have been conducted on the criteria, procedures, and methodologies for identifying OECMs, as well as on their governance and long-term effectiveness.
Perspectives: Despite the growing international recognition of OECMs, their effective implementation and monitoring continue to face significant challenges that require urgent attention. This study explores future development pathways for OECMs within the Kunming-Montreal Global Biodiversity Framework, with a particular focus on accelerating their mainstreaming, enhancing biodiversity conservation effectiveness through robust monitoring and evaluation mechanisms, establishing clear de-designation procedures, fostering cross-sectoral collaboration and multi-stakeholder governance, and advancing research and formal recognition of marine OECMs. These efforts aim to contribute to the refinement of biodiversity conservation strategies in China and globally, providing a scientific basis for the effective integration of OECMs into broader conservation frameworks.

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Annual review on fungi nomenclature novelties in China and around the world (2023)
Ke Wang, Mingjun Zhao, Lei Cai
Biodiv Sci    2024, 32 (11): 24361.   DOI: 10.17520/biods.2024361
Accepted: 27 December 2024

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Aims: Compilations of biodiversity catalogs are of great significance for biodiversity research, resource protection, and social and economic development. However, due to rapid research progress, a large number of new species and distribution records are reported every year, which requires accurate methods to summarize the discoveries of new taxa, as well as update species checklists frequently.

Method: Taxonomic data for newly published fungal names were retrieved and analyzed from the Fungal Names nomenclatural repository.

Results: In 2023, 2,050 scholars published 4,372 new fungal names throughout the world, including 7 classes, 17 orders, 56 families and subfamilies, 316 genera and subgenera, 2,997 species and intraspecific taxa, 831 combinations, 33 replacement names and 115 other names. These new names belonged to 3 kingdoms, 13 phyla, 47 classes, 170 orders, 441 families and 1,342 genera, among which micro-ascomycetes received the most attention. These newly published 2,975 fungal species were discovered from 102 countries and regions throughout the world, with eastern and southern Asia as the most noticeable spot for novel species discovery. In particular, China remained the most imminent country for annual species discoveries (1,249 species) that accounts for 41.98% of the world’s total new species. Additionally, Chinese scholars led the world in research output on fungal taxonomy in 2023, where 548 Chinese scholars participated in the publications of 2,160 new fungal names to contribute to nearly half of the world’s total new names.

Conclusion: The total number of fungal nomenclature novelties published globally this year has decreased slightly compared to last year, but it still remains fluctuating upwards in line with the general trend of previous years. Except for China, Australia, Brazil, Thailand and the United States remain in the lead, Asian countries such as India, Japan and Pakistan have become the new hot spots of fungal research instead of European countries. Since 2021, the number of new names published by Chinese scholars, and the contribution ratio to the world have broken the historically record for consecutive two years.

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The experimental evolution approach
Nan Chen, Quan-Guo Zhang
Biodiv Sci    2024, 32 (9): 24171.   DOI: 10.17520/biods.2024171
Accepted: 05 July 2024

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Background: Experimental evolution is the study of evolutionary processes and consequences in experimental populations under conditions controlled by investigators. Experimental evolution is a prospective research approach, in contrast to the majority of studies in evolutionary biology that are retrospective. Given the advantages of experimental evolution, a growing number of evolutionary biologists have used this research tool to test critical hypotheses associated with the modern evolutionary synthesis.
Subjects & Field: Subjects of experimental evolution could be real or virtual organisms; and evolution experiments with real organisms can be carried out in laboratory or in the field. Microorganisms are often used as materials in experimental evolution studies because of their rapid growth and reproduction, and the ease of preservation. Experimental microbial evolution has been used to study topics including the dynamics of adaptive evolution, patterns of population differentiation and species coevolution, and even the origin of multicellularity. It also has obvious advantages in addressing the roles of contingency and determinism in evolution and predicting evolutionary processes under global change.
Conclusion: The experimental evolution approach has been used more widely in recent years, though its limitations do exist. This method will play an increasingly important role in research, industry, and education in future.

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2023 annual report on new taxa and nomenclatural changes for Chinese plants
Cheng Du, Jun Liu, Wen Ye, Shuai Liao
Biodiv Sci    2024, 32 (11): 24253.   DOI: 10.17520/biods.2024253
Accepted: 27 December 2024

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Aims: Since 2020, the average annual number of changes in plant names in China has accounted for roughly 1.5% of all changes. Although these plant name changes are not large, cumulative changes over time should not be ignored. Indeed, it is necessary to annually compile information on new taxa, records, and name changes to Chinese plants to integrate these changes into the Catalogue of Life China in a timely manner to facilitate more accurate references for academia and research.

Methods: We collected data on newly discovered taxa and name changes for Chinese higher plants by reviewing 233 journals and related monographs, supplemented by cross-referencing and systematic review using various online databases to ensure the accuracy and comprehensiveness of the compiled information. This compilation involved 419 articles from 63 journals and 4 monographs, and mainly focused on the new taxa and nomenclatural changes in higher plants in 2023.

Results: In 2023, China reported several new taxonomic findings, including 14 genera, 241 species (including new hybrid species), 13 infraspecific taxa, 13 higher taxa (including 7 subfamilies, 4 supertribes, and 2 tribes), 2 subgenera, and 6 sections in higher plants. Additionally, 185 novel combinations (173 at the species level and 12 at the infraspecific level) and 15 new names were published. At the national level, 1 new record family, 5 new record genus, 82 new record species, and 4 new record infraspecies were recently documented. Furthermore, 86 names were synonymized into 58 names. Five species that had not been observed for many years were rediscovered, and one species distribution was excluded. Among the newly published species, there were 9 bryophytes, 23 pteridophytes (including 1 infraspecific taxon), 1 gymnosperm hybrid, and 221 angiosperms (including 2 hybrids and 12 infraspecific taxa). Detailed molecular evidence was provided for 116 of these novel species at the time of publication that account for 46% of all new species. Additionally, 62 species were assessed as threatened according to IUCN standards upon their publication, which represents 24% of all new species. By location, the four southwestern provinces, i.e. Yunnan, Xizang, Guangxi, and Sichuan, published the highest number of new species and accounted for two-thirds of the total new species reported nationwide. In particular, Mêdog County recorded the highest number of new species among county-level administrative units, with 14 new species and records. Likewise, Yingjiang County reported the highest number of national new records, with 21 new plant records documented.

Conclusion: In 2023, China witnessed a net increase of 262 new taxa of higher plants that accounts for roughly 0.56% of all Chinese higher plant species. In addition, 200 names underwent changes, which accounts for 0.43%. These changes represented 0.99% of all Chinese higher plant names modified in 2023 and encompasses both species additions and nomenclature treatments. Multiple indicators suggest that the number of newly published plant taxa and name changes in China are beginning to show a downward trend. However, data tracking and analysis are needed to determine if this decline will continue in the future.

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Consolidating the scientific foundation for global wild plant conservation and sustainable trade—Comments on the 27th Meeting of the Plants Committee of CITES
Tuo He, Yan Zeng, Yafang Yin, Kun Zhang, Liangchen Yuan, Hui Dong, Zhihua Zhou
Biodiv Sci    2024, 32 (9): 24390.   DOI: 10.17520/biods.2024390
Accepted: 19 November 2024

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Background: The 27th Meeting (PC27) of the Plants Committee of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) was held from 8 to 13 July 2024 in Geneva, Switzerland, attended by 190 representatives of 46 Parties and 30 observer organizations from around the world.
Progress: This meeting included 42 agenda items, mainly discussing the progress in the implementation, and approving some revised drafts of resolutions and decisions for submission to the 20th Conference of the Parties to the CITES (CoP 20). Specifically, the Review of Significant Trade in specimens of Appendix II species such as Aquilaria spp., Gyrinops spp., and Pterocarpus erinaceus was decided; the regulation and protection of products containing specimens of Appendix II Orchidaceae spp. was discussed; the new resolution of “Trade in medicinal and aromatic plant species” was postponed; the resolution of “Implementation of the Convention for agarwood-producing taxa” and the new “CITES Non-Detriment Findings Guidance” and “Guidance on the term artificially propagated” were approved for submission in this meeting.
Perspectives: PC27 reflected the concerted efforts made by all parties to ensure the sustainability of international trade in wild plants, promotes international cooperation and capacity building on CITES science and technology issues, and was also characterized by increased collaboration between CITES and the Convention on Biological Diversity, expansion of its mandate, and weakening of the science. A new trend of the CITES Plants Committee appeared during PC27, from the establishment of a regulatory system for ornamental plants two decades ago, with a focus on the conservation and management of tropical and subtropical tree species a decade ago, to the current exploration of sustainable trade in medicinal and aromatic plants that are vital to health and livelihoods.
Recommendations: To implement the CITES more effectively, our country should consolidate the scientific foundation of CITES, improve the research capacity on Non-Detriment Findings, establish a talent team for CITES implementation, and promote the conservation and sustainable use of wild plants.

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A dataset on the checklist and geographical distribution of Gesneriaceae in China
Ke Tan, Yao Ning, Renfen Wang, Qing Wang, Danping Liang, Zibing Xin, Fang Wen
Biodiv Sci    2025, 33 (1): 23275.   DOI: 10.17520/biods.2023275
Accepted: 18 February 2025

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China serves as a global biodiversity hotspot for Gesneriaceae, with particularly high species richness and exceptional endemism rates concentrated in its southwestern regions. The family Gesneriaceae is characterized by its rich biological diversity, reproductive and nutritional organ phenotypic polymorphism, and a pan-tropical distribution pattern. These characteristics make this taxon a primary focus in research related to biogeography, evolutionary ecology, conservation biology, and more. Despite the importance of Gesneriaceae, investigations concerning its biodiversity in China have been limited to cataloging species, or some other generic analyses. This has left a gap in understanding the diversity distribution patterns of Gesneriaceae throughout China. To fill this gap, this study compiled literature and specimen data to catalogue Gesneriaceae and establish a geographic distribution database for China’s known Gesneriaceae. The findings reveal that Gesneriaceae primarily inhabit the tri-junction of Yunnan, Guizhou, and Guangxi, as well as the Hengduan Mountains, southeastern Tibet, and across southern provinces. As of 30 June 2024, the Gesneriaceae in China comprised 46 genera and 880 species (including 58 varieties). Among these, Guangxi Zhuang Autonomous Region had the most species (324), followed by Yunnan Province (319 species) and then Guizhou Province (159 species). At the county scale, Malipo County (70 species) and Pingbian Miao Autonomous County (63 species) of Yunnan Province had the most Gesneriaceae diversity. These invaluable findings will enable Chinese researchers to further their investigations and conservation efforts related to Gesneriaceae.

Database/Dataset Profile

Title A dataset on the checklist and geographical distribution of Gesneriaceae in China
Data author(s) Ke Tan, Yao Ning, Renfen Wang, Qing Wang, Danping Liang, Zibing Xin, Fang Wen
Data corresponding author Fang Wen (wenfang760608@139.com)
Time range As of 30 June 2024
Geographical scope China
File size 637.85 kb
Data format *.xlsx
Data link
https://doi.org/10.57760/sciencedb.20603
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023275.zip
Database/Dataset composition The dataset includes two data files, (1) 880 species of Gesneriaceae in China and their distribution data; (2) Reference for the catalogue and geographical distribution dataset of Gesneriaceae in China (author, year, literature, press, volume, issue, page).
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Research advances and prospects on β diversity based on ecological uniqueness
Yue Chen, Zikun Mao, Xugao Wang
Biodiv Sci    2024, 32 (12): 24199.   DOI: 10.17520/biods.2024199
Accepted: 16 July 2024

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Background & Aim: Ecological uniqueness is a key component of β diversity, primarily quantifying the relative contribution of each sampling site to the total variation in community composition. This concept is of great significance for biodiversity conservation and restoration. Over the past decade, ecological uniqueness has received substantial attention from ecologists and conservation biologists, leading to significant advancements in its quantifications, spatiotemporal patterns, driving mechanisms, ecological functions, and applications in biodiversity conservation. We first summarized the main methods for calculating ecological uniqueness, we then conducted a systematic review of literatures on taxonomic ecological uniqueness from 2013 to 2023. Furthermore, we elaborated on its spatiotemporal patterns and underlying mechanisms. Moreover, we explored the potential impact of ecological uniqueness on ecosystem functioning and its implications for biodiversity conservation.

Review Results: Ecological uniqueness can primarily be calculated using community composition datasets or dissimilarity matrices. Studies on ecological uniqueness are predominantly concentrated in Europe, America, and Asia, focusing mainly on animal and plant groups. Moreover, the literature reviews several key findings: (1) Ecological uniqueness exhibits clear latitudinal or elevational gradients, though these patterns differences among different biological groups and study regions. (2) Multiple abiotic and biotic factors, such as climate, soil, and community characteristics, significantly shape the ecological uniqueness of different biological groups by influencing species range size, community richness and species compositions. (3) Ecological uniqueness can promote or decrease ecosystem functioning, depending on combinations of species or the proportions of specific groups present. (4) Regions with higher ecological uniqueness often harbor a higher proportion of rare or endangered species, contributing significantly to regional biodiversity. These regions are typically considered as key areas for biodiversity conservation.

Perspectives: This review also discusses the directions of future research on ecological uniqueness, with particular emphasis on: (1) Conducting in-depth researches on multidimensional (taxonomic, functional, and phylogenetic) ecological uniqueness; (2) Focusing on the patterns and driving mechanisms of ecological uniqueness across different spatiotemporal scales; (3) Applying new technologies and methods for future assessment of ecological uniqueness.

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Spatial distribution patterns and intraspecific and interspecific associations of dominant species in subalpine cold-temperate coniferous forests of Shangri-La, Yunnan, China
WAN Jia-Min, ZHANG Cai-Cai, DENG Yun, GU Rong, SINA Qu-Zong, WU Jun-Hua, LOU Qi-Yan, CHEN Mei, ZHANG Zhi-Ming, LIN Lu-Xiang
Chin J Plant Ecol    2025, 49 (2): 268-281.   DOI: 10.17521/cjpe.2024.0066
Accepted: 18 December 2024

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Aims The spatial distribution patterns of plant populations result from the combined effects of multiple ecological processes, such as dispersal limitation and environmental filtering. The plants distributed in alpine treeline ecotones are highly sensitive to climate change due to their unique habitats. Therefore, studying the spatial distribution patterns of these plants and their correlations is critical for understanding and predicting the dynamics and trends of forest communities in alpine treelines.

Methods This study is based on the inventory data collected from a 20 hm2dynamics plot of a subalpine cold-temperate coniferous forest in Shangri-La, Yunnan, China. The dominant tree species identified were Abies georgei, Lonicera tangutica, Dipelta yunnanensis, Rhododendron rubiginosum, and Sorbus rehderiana. The spatial point pattern method was used to analyze the spatial distribution pattern of each dominant species, the intraspecific association of A. georgei at different developmental stages, the interspecific association between A. georgei and the other dominant species, and the interspecific association among the other dominant species. Additionally, the Torus-translation method was applied to test the associations between these plants and topographic factors.

Important findings (1) Sapling and juvenile trees of A. georgei demonstrated aggregated distributions, primarily driven by dispersal limitation and habitat heterogeneity. In contrast, adult trees exhibited a predominantly random distribution, suggesting that density-dependent competition may be the primary factor influencing the distribution of individuals in large-diameter classes. The dominant species in both the subtree layer and shrub layer also demonstrated aggregated distribution. However, the posterior partial advantage of the environmental heterogeneity transformed into a random distribution, indicating that environmental filtering might be responsible for driving the spatial distribution pattern of these tree species. (2) Positive associations were observed between sapling and juvenile trees of A. georgei indicating that small-diameter individuals tend to congregate due to an enhanced capacity to cope with external environmental stresses. Conversely, saplings and juvenile trees were negatively correlated with adult trees. This was mainly due to the infestation of specific pathogens and phytophagous insects caused by density constraints and asymmetric competition of large individuals against smaller ones. (3) There were positive and negative correlations between the saplings and the dominant species in the subtree layer and the shrub layer, respectively. The juvenile trees and other dominant species revealed predominantly negative correlation, while the adult trees showed predominantly positive correlation. The majority of the dominant species in the tree layer and shrub layer exhibited positive correlation, indicating a complex dynamic balance within the dominant species in the subalpine cold-temperate coniferous forest. The long-term coexistence of each dominant species in the plot is achieved through their unique survival strategies and resource utilization, and ultimately leading to the formation of a relatively stable successional climax community dominated by A. georgei. (4) Slope was found to be significantly negatively correlated with sapling and juvenile trees of A. georgei, and significantly positively related to R. rubiginosum and D. yunnanensis. This suggests that the slope ecological niche differentiation occurred between A. georgei and other dominant species. Additionally, convexity was found to exert a significant effect on the distribution of dominant species due to adverse conditions such as prolonged snowpack in winter. In conclusion, the habitat filtering driven by topography is the main driver that maintains community assembly in subalpine cold-temperate coniferous forests.

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Invasive plant species lead to a more clustered community phylogenetic structure: An analysis of herbaceous plants in Guangxi’s national nature reserves
Xianglin Yang, Caiyun Zhao, Junsheng Li, Fangfang Chong, Wenjin Li
Biodiv Sci    2024, 32 (11): 24175.   DOI: 10.17520/biods.2024175
Accepted: 01 August 2024

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Aims: Invasive alien plants, particularly herbaceous species, posed a threat to the native community structure and ecosystem functions of nature reserves. This study aims to investigate the influence of invasive alien herbs on the phylogenetic structure of plant communities across 13 national nature reserves in Guangxi.

Methods: A total of 1,046 plots were surveyed for herbaceous plants in 13 national nature reserves. A phylogenetic tree was constructed using species data and nucleotide sequences, including the rbcL, matK, and ITS obtained from GenBank. The structural composition of herb communities was assessed using standardized effect sizes of mean phylogenetic distance and mean nearest-taxon distance (SES.MPD and SES.MNTD). R software was used to visualize the phylogenetic changes in herb communities following the naturalization of invasive alien herbs.

Results (1) Forty-seven species of invasive alien herb plants (from 38 genera and 15 families) were recorded in 13 national nature reserves. Thirty-two (68.1%) of these species were classified as serious and malignant invasive species, predominantly comprising annual Asteraceae herbs originating from the Americas. Each national nature reserve were affected by invasive alien herbs, with the highest number of species found in Damingshan National Nature Reserve (24 species) and the lowest number found in Yuanbaoshan National Nature Reserve (5 species). (2) In eight (61.5%) national nature reserves, the introduction of invasive alien herbs consistently led to reduced phylogenetic diversity at two phylogenetic levels, regardless of whether these communities were initially clustered or overdispersed. This reduction indicated increased phylogenetic clustering among herb communities.

Conclusion: Compared to communities composed solely of native species, the inclusion of invasive alien species leads to a more clustered phylogenetic structure. We examined the impacts of alien invasion on biodiversity from a phylogenetic perspective, provides a theoretical foundation for future prevention and management of invasive alien plants in nature reserves.

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Biological invasions: Invasive alien species and biodiversity conservation
Junsheng Li, Feihai Yu, Caiyun Zhao
Biodiv Sci    2024, 32 (11): 24582.   DOI: 10.17520/biods.2024582
Accepted: 13 January 2025

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Limiting factors and key techniques for restoration of degraded grasslands in China
YANG Yuan-He, PENG Yun-Feng
Chin J Plant Ecol    2025, 49 (1): 1-6.   DOI: 10.17521/cjpe.2024.0433
Accepted: 24 December 2024

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Genetic Dissection of Drought Resistance in Maize
Ziyang Wang, Shengxue Liu, Zhirui Yang, Feng Qin
Chinese Bulletin of Botany    2024, 59 (6): 883-902.   DOI: 10.11983/CBB24089
Accepted: 01 August 2024

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Maize (Zea mays) is the main crop in China, and drought is a primary abiotic stress during its growth, resulting in direct reduction in grain yield and quality, thereby posing a threat to food security within the global climate context. At present, global climate change leads to extreme weather events, which aggravates the adverse effects on yield. Therefore, it is imperative to identify drought-resistant germplasm resources, elucidate the molecular mechanisms of drought stress response, and breed drought-resistant varieties. Here, we review recent advances in the genetic dissection of drought resistance in maize using methods such as genome-wide association study, quantitative trait locus gene cloning and multi-omics analysis. Additionally, we introduce potential strategies for genetic improvement of drought resistance by leveraging the identified genetic resources while discussing future perspectives within this research area.

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Fish diversity and distribution in the source region of the Yangtze River in Qinghai Province
Ma Wenjun, Liu Sijia, Li Kemao, Jian Shenglong, Xue Chang’an, Han Qingxiango, Wei Jinliang, Chen Shengxue, Niu Yimeng, Cui Zhouping, Sui Ruichen, Tian Fei, Zhao Kai
Biodiv Sci    2025, 33 (2): 24494.   DOI: 10.17520/biods.2024494
Accepted: 20 February 2025

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Aims: The study aims to investigate the fish composition and diversity patterns in the source region of the Yangtze River, one of the most critical water conservation zones worldwide.

Methods: Field surveys were conducted in the headwaters of the Yangtze River, including the Tuotuo, Chumaer, Dam Qu, Tongtian, and Dadu rivers in Qinghai Province from 2021 to 2022. Data on the presence and abundance of fish, as well as environmental factors, were collected during the surveys.

Results: A total of 26 species (and subspecies) were recorded in the field surveys, belonging to 12 genera, 3 families, and 2 orders. Analysis of the index of relative importance (IRI) revealed that Schizopygopsis malacanthus and Herzensteinia microcephalus were the dominant species. Seven species are newly recorded, including four native species and three non-native species. Alpha diversity indices showed higher species diversity in the Tongtian and Dadu rivers compared to other tributaries, while the Yalong River exhibited a more uneven species distribution. Similarity coefficient analysis and principal coordinates analysis (PCoA) indicated significant differences in species composition among tributaries, highlighting the influence of geographic isolation and ecological adaptation on fish diversity. Canonical correspondence analysis (CCA) revealed notable differences in fish community structures across different river systems, with water temperature and altitude identified as key determinant factors. Spatial autocorrelation analysis indicated that the fish distribution patterns were random, with a slight tendency towards clustering. The Getis-Ord Gi* analysis identified two hotspots in the Dadu and the Tongtian rivers.

Conclusion: This study provides updated information on the fish composition in headwaters of the Yangtze River and enhances our understanding of spatial variations in fish diversity in the region. These findings lay the foundation for scientific management and conservation of native fish in the source region of the Yangtze River.

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Deciphering the nutrient factors limiting vegetation restoration under different degradation stages in typical steppe of Nei Mongol, China
FANG Kai, WANG Ying-Xin, HUANG Jian-Hui, DUAN Jun-Guang, ZHANG Qi, ZHANG Qian, GAN Hong-Hao, CHU Jian-Min
Chin J Plant Ecol    2025, 49 (1): 7-18.   DOI: 10.17521/cjpe.2024.0082
Accepted: 23 August 2024

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Aims Grasslands provide many kinds of ecological services, including carbon sequestration, sand fixation, and biodiversity maintenance. However, some grasslands are experiencing degradation. To provide scientific theoretical support for grassland restoration, it is necessary to understand the limiting factors for vegetation restoration in degraded grasslands. In this study, we explored nutrient limiting factors for vegetation restoration under different degradation stages in typical steppe of Nei Mongol.

Methods Plant and soil samples were collected during August in 2021-2022, from 13 sampling sites (four plant communities under different degradation stages within each site: non-degradation, light degradation, moderate degradation, and heavy degradation) in typical steppe. We examined the effects of degradations on above-ground biomass, coverage, and density of plant communities. Soil organic carbon, nitrogen and phosphorus contents were measured. Multiple statistical analyses, including least squares regression analysis, redundancy analysis, and multiple linear regression analysis, were used to clarify the nutrient limiting factors for vegetation restoration in degraded grasslands.

Important findings Plant community above-ground biomass, coverage, and density, as well as the contents of soil organic carbon, total nitrogen, and available phosphorus significantly decreased with the intensification of degradation. Under the whole degradation sequence and adjacent degradation succession stages, soil nitrogen content was the most influential factor on plant community properties, while soil phosphorus content marginally affected the overall degradation sequence. These results indicate that soil nitrogen availability is the most important nutrient factor limiting vegetation restoration. Consequently, nitrogen fertilization should be concerned in the future restoration works.

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Bryophytes diversity of Hebei Province, China
Jianan Han, Yang Su, Fei Li, Junyan Liu, Yilin Zhao, Lin Li, Jiancheng Zhao, Hongzhu Liang, Min Li
Biodiv Sci    2024, 32 (9): 24096.   DOI: 10.17520/biods.2024096
Accepted: 18 July 2024

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Aims: The foundation of biodiversity study is the accurate description of existing species and a clear enumeration of their numbers. A comprehensive checklist is the basic data for understanding and conserving biodiversity within a specific region. To thoroughly understand the current status of bryophyte diversity in Hebei Province, it is important to revise the list of bryophytes in the province.
Method: Based on our team’s research findings over the years and recent publications, this study compiles an updated checklist of bryophytes in Hebei Province. We analyzed the species composition, floristic characteristics, dynamic changes, and threatened status of bryophytes.
Results: The updated checklist documents 544 species across 190 genera and 76 families, including 468 mosses in 152 genera and 51 families, 75 liverworts in 37 genera and 24 families, and 1 hornwort. Among them, 8 families and 12 genera are dominant. The bryophyte flora of Hebei Province is predominantly characterized by northern temperate elements, with the proportion of temperate components outnumbering tropical ones. The checklist includes 33 species endemic to China, 4 Endangered species, and 5 Vulnerable species. Compared to the previous checklist, there are 10 newly recorded families, 34 newly recorded genera, and 162 newly recorded species, while 9 species have been removed and 86 names revised. The main newly reported groups include the families Mniaceae and Pottiaceae, and the genera Brachythecium and Bryum, etc.
Conclusions: The diversity of bryophytes in Hebei is relatively rich, though the investigation reveals regional imbalances. Future efforts should focus on strengthening bryophyte surveys in weak areas (e.g., Qinhuangdao, Tangshan, Handan), and timely updates to the checklist are necessary. In addition, under the background of global climate change, we should pay more attention to the dynamic changes in bryophyte populations to provide a scientific basis for the study and conservation of bryophyte diversity in Hebei Province.

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Advances in the Application of Single-cell Transcriptomics in Plant Growth, Development and Stress Response
Yaping Wang, Wenquan Bao, Yu’e Bai
Chinese Bulletin of Botany    2025, 60 (1): 101-113.   DOI: 10.11983/CBB24048
Accepted: 19 August 2024

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Single-cell transcriptomics has improved the spatiotemporal resolution from multi-cell to single-cell levels, and notable progress in this technique has facilitated the identification of new rare cell types, exploration of intercellular heterogeneity, and mapping of cell developmental trajectories. Single-cell transcriptomics is currently being widely used in various research fields such as plant growth and development, stress response, and environmental adaptability, which helps to more thoroughly and precisely uncover the molecular regulatory mechanisms underlying plant life processes. However, there are numerous challenges associated with the study and analysis of different plant species. In this review, we compare and evaluate various single-cell transcription techniques and processes, summarize plant single-cell studies in recent years, and explore new single-cell analysis tools to support researchers studying plant biology with high precision and dynamics. In addition, we propose future directions in using single-cell transcriptomics technologies to address some of the key challenges in plant research and breeding. Furthermore, some important methods for addressing plant research and breeding with single-cell transcriptomics are discussed, along with their difficulties and potential applications.

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A brief discussion on methodology in taxonomy
Hong Deyuan
Biodiv Sci    2025, 33 (2): 24541.   DOI: 10.17520/biods.2024541
Accepted: 25 March 2025

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The author has been engaged in taxonomic research for 60 years, from Flora of China to world monographs, and has been recognized both at home and abroad. During this process, the author has realized that a complete and reasonable research method is of vital importance. Taxonomy is a highly comprehensive discipline, involving almost all branches of biology, among which morphology, palynology, cytology, genetics, molecular biology and statistics are indispensable. Taking the research on the genus Paeonia (Paeoniaceae) and the genus Codonopsis (Campanulaceae) and their related groups as examples, the author has applied all the above-mentioned disciplines, emphasizing that field investigation and statistical analysis are indispensable research methods. Only through field investigation can necessary experimental materials be obtained and between the population polymorphism and interspecific differences be distinguished; only through statistical analysis can intraspecific variations and genetic isolation be differentiated. The rise of molecular systematics has brought taxonomy into a brand-new era, and taxonomists must recognize and learn it. My team has applied it in the above two studies and achieved unexpected results. My feeling is that high-level research must be based on complete scientific methods.

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Terrestrial carbon sink in Yunnan Province and its contribution to carbon neutrality
HUANG Mei, SHI Yue, SUN Wen-Juan, ZHAO Xia, CHANG Jin-Feng, FANG Jing-Yun
Chin J Plant Ecol    2024, 48 (10): 1243-1255.   DOI: 10.17521/cjpe.2023.0139
Accepted: 11 August 2023

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Aims Exploring the characteristics of carbon source-sink has significant implications for guiding local governments in achieving its “dual carbon” goal. This study comprehensively assessed the dynamics of carbon emissions, terrestrial carbon sinks, the contribution of terrestrial carbon sinks in offsetting carbon emissions, and the impacts of clean energy production on the carbon emissions in Yunnan Province from 1981 to 2020, and further investigated the terrestrial carbon balance in the next four decades projected by coupled model intercomparison project phase 5 (CMIP5) earth system models under two climate scenarios.

Methods Two independent methods were used to estimate historical ecosystem carbon sinks in Yunnan Province. One was based on field observation data combined with empirical models, and the other was based on four terrestrial ecosystem models. The projections of future carbon balance in Yunnan Province were derived from five earth system models of CMIP5 under two scenarios (RCP4.5 and RCP8.5). Carbon emissions were estimated using the Intergovernmental Panel on Climate Change (IPCC) Guidelines for National Greenhouse Gas Inventories, and China’s Provincial Guidelines for Greenhouse Gas Emission Inventory.

Important findings The results show that the terrestrial carbon sink in Yunnan Province varied between 12.41 and 31.22 Tg C·a-1 over the past 40 years, with an average sink of 19.41 Tg C·a-1. The highest ratio (247%) of ecosystem carbon sinks to carbon emissions (sink emission ratio) in Yunnan Province occurred during the period from 1981 to 1985, while the ratio has declined since then and reached its lowest value during the period of 2006-2010 followed by a slight increase after that. The ratio was 54% during the period of 2016-2020. The rise of the sink emission ratio in the past decade can be mainly attributed to the promotion of clean energy production, the increase in forest area, and the decrease in energy intensity. Large-scale deployment of clean energy in Yunnan Province has in general satisfied the energy needs of economic development, reducing the reliance of its economy on CO2 emissions. Model projections indicated that under future climate change scenarios (RCP4.5 and RCP8.5), the net ecosystem productivity (NEP) in Yunnan Province during the 2020s and the 2030s may be lower than that during 2016-2020, while carbon sink may increase in the 2040s to 2050s. This study suggests that in the future, Yunnan Province should further develop clean energy programs, increase energy efficiency, and enhance ecosystem carbon sink to support both the achievement of carbon neutrality and regional high-quality development.

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Effects of leaf traits on herbivory across 27 woody plants in the subtropical forest: testing the growth-defense trade-off hypothesis
WANG Zhen-Yu, HUANG Zhi-Qun
Chin J Plant Ecol    2024, 48 (11): 1501-1509.   DOI: 10.17521/cjpe.2023.0290
Accepted: 18 February 2024

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Aims Differences in herbivory among plant species can greatly affect the functioning of forest ecosystems. However, little is known about the main drivers causing interspecific differences in herbivore damage among tree species. The growth-defence trade-off hypothesis posits that the intrinsic growth rate of plant species governs resource allocation between defense and growth, thereby shaping interspecific variation in herbivory. However, the validity of this hypothesis is extensively debated, especially in highly species-rich subtropical forests.

Methods We quantified leaf herbivore damage in 27 native tree species in a tree species diversity experiment conducted in subtropical China. We measured 12 leaf traits associated with insect palatability and relative growth rates of 27 tree species. Using a combination of phylogenetic multivariate analyses, we assessed trade-offs between leaf traits and the relative effect of these traits on leaf herbivore damage.

Important findings We found 1) neither phylogenetic principal component analysis nor hierarchical cluster analysis supported the idea that species displayed one-dimensional trade-off; 2) Conventional strategies, such as content of condensed tannins, are not strongly involved as a defence against herbivores; 3) No significant trade-off between plant intrinsic growth rate and chemical defence traits for the 27 studied tree species. Our results do not support arguments for growth-defense trade-off hypothesis. Rather, plants exhibit a range of combinations of leaf traits. We suggest this lack of a one-dimensional trade-off may be adaptive, resulting from selective pressure to adopt a different combination of defences to coexisting species.

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Application of passive acoustic methods in biodiversity monitoring and research
Zhishu Xiao
Biodiv Sci    2024, 32 (10): 24462.   DOI: 10.17520/biods.2024462
Accepted: 23 December 2024

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Impact of urban landscape pattern on the genetic structure of Thereuopoda clunifera population in Nanjing, China
Jiachen Wang, Tangjun Xu, Wei Xu, Gaoji Zhang, Yijin You, Honghua Ruan, Hongyi Liu
Biodiv Sci    2025, 33 (1): 24251.   DOI: 10.17520/biods.2024251
Accepted: 13 September 2024

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Aims: Urbanization, the rapid expansion of urban areas and the transformation of natural landscapes into manmade environments, has significantly altered the habitat of many organisms. This process has not only reshaped landscapes but also impacted ecological balance. Soil fauna are integral components of the food chain and play a crucial role in nutrient cycling, soil formation, and overall ecosystem health. Investigating the impact of urban landscape patterns on the genetic diversity and population structure of soil fauna can lead to new knowledge that can be used to protect the biodiversity within urban ecosystems.

Methods: A total of 133 samples of Thereuopoda clunifera from seven populations in Nanjing, China were collected for this study. The mitochondrial Cytbgene and six microsatellite loci were used as molecular markers to analyze the genetic diversity and genetic structure of T. clunifera. To investigate the impact of urban landscape patterns on soil fauna genetic diversity and genetic structure, correlation analysis was used to understand the association between genetic diversity and habitat or urbanization levels. We then evaluated potential corridors that could enable gene flow between local T. cluniferapopulations by calculating the Euclidean distance, least-cost path, and effective resistance between these populations. Finally, we explored the effect of geographical and resistance distance on genetic differentiation among local populations using the Mantel test for each local population based on their genetic distance.

Results: We identified six haplotypes and 14 mutation sites, from the Cytb dataset. Nucleotide diversity indices were below 0.005 for all populations, signifying low genetic diversity. The microsatellite markers revealed an average number of alleles ranging from 4.167 to 5.167 and observed heterozygosity from 0.470 to 0.603, indicating high microsatellite diversity across populations. No correlation was found between habitat area, degree of urbanization near the habitat, and population genetic diversity. The fixation index between populations ranged from 0.020 to 0.106, with gene flow ranging from 2.108 to 12.266, suggesting low levels of genetic differentiation and frequent gene exchange between populations. Cluster analysis based on individual classifications was performed on the seven populations. The results indicated that the highest value of Delta K was observed when K = 2, indicating that all individuals could be divided into two genetic groups. Among the seven populations, Tang Mountain and Fang Mountain (TS and FS) exhibited similar genetic structures, which were significantly different from the other five populations. The level of genetic differentiation between populations was significantly positively correlated with the predicted physical barriers between them, suggesting that the genetic structure of T. clunifera populations may be influenced by urbanization. Effective connectivity between patches facilitates gene flow among populations, with dispersed urban green spaces acting as corridors that offer opportunities for gene flow.

Conclusion: The overall genetic diversity of mitochondrial genes in the population of T. clunifera is relatively low, but the microsatellite diversity across all populations is high. Urbanization and habitat area are not correlated with the level of population genetic diversity in T. clunifera. There is moderate genetic differentiation among T. clunifera populations within the city of Nanjing, indicating a certain level of gene flow between them. Compared to geographical distance, diffusion resistance better reflects the diffusion patterns of T. clunifera within the city. Insights from this work establish a foundational framework for the preservation of urban biodiversity and the strategic design of ecological spaces, such as preserving green spaces to encourage gene flow between soil fauna populations.

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Impact of ectomycorrhizal tree dominance and species richness on soil nitrogen turnover in a warm temperate forest
Xinyi He, Yumei Pan, Yan Zhu, Jiayi Chen, Sirong Zhang, Naili Zhang
Biodiv Sci    2024, 32 (9): 24173.   DOI: 10.17520/biods.2024173
Accepted: 23 July 2024

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Aims: Ectomycorrhizal (EcM) trees are the dominant tree species in temperate forests and play a vital role in driving ecosystem functions, particularly soil nitrogen turnover. The proportion of EcM tree species within a community is believed to influence the relationship between plant diversity and ecosystem function; however, the underlying mechanisms remain unclear. In this study, we aim to investigate the effects of tree species richness, the proportion of EcM tree species, and various biotic and abiotic factors on nitrogen turnover and availability in soil collected from different habitats and depths within a warm-temperate forest ecosystem.
Methods: Soil samples were collected over time from a 20-ha plot in the warm-temperate deciduous broad-leaved forest of Dongling Mountain. Each sample was analyzed to determine the net nitrogen mineralization rate (Rm), nitrification rate (Rn), and concentration of inorganic nitrogen (NH4+-N and NO3-N). Soil nitrogen mineralization and nitrification are crucial ecological processes that indicate soil nitrogen availability. We also assessed the presence of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), which are key drivers of soil nitrogren processes.
Result: The proportion of EcM tree species had a stronger, and habitat-dependent effect on soil nitrogen turnover and availability compared to tree species richness. Specifically, Rm, Rn, NH4+-N, and NO3-N significantly decreased with increasing proportions of EcM tree species in low altitude areas with gentle slopes and mid altitude steep slopes. Additionally, while NH4+-N significantly decreased, Rn increased with greater tree species richness in low altitude areas with gentle slopes. Soil inorganic nitrogen was limited by the proportion of EcM tree species in subsoil and deep soil layers than in topsoil, with both NH4+-N and NO3-N significantly decreasing as the proportion of EcM tree species increased. Further, Rm, Rn, NH4+-N, and NO3-N showed stong correaltions with the proportion of EcM tree species, tree species richness, soil moisture, and the presence of AOA and AOB. Multivariate linear regression analysis indicated that soil moisture, AOA, and AOB were major contributers to variations in Rm, Rn, NH4+-N, and NO3-N.
Conclusion: Our findings demonstrate that the proportion of EcM tree species, rather than overall tree species richness, plays a more critical role in influencing soil nitorgen turnover and availability in the warm-temperate forest ecosystem. This effect is primarily associated with soil moisture, and AOA and AOB. Our findings are significant for developing a theoretical framework that explores the relationships between tree species richness, the proportion of EcM tree species, and ecosystem functions. Moreover, our findings strengthen our capacity for biodiversity conservation and sustainable management in warm-temperate forest ecosystems.

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Chinese enterprises’ biodiversity disclosure index construction and financing effects
Xinmeng Tang, Tao Qin
Biodiv Sci    2025, 33 (1): 24264.   DOI: 10.17520/biods.2024264
Accepted: 04 November 2024

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Backgrounds & Motivations: The financial gap in addressing biodiversity loss is considerable, highlighting the need for the involvement of enterprises and financial institutions in biodiversity protection to provide necessary funding for biodiversity risk management. However, the information regarding to biodiversity in reports from Chinese listed enterprises remains limited, often lacking substance and credibility. It is imperative for enterprises to establish a biodiversity information disclosure mechanism that signals low biodiversity risk to financial and capital markets, thereby enhancing their financing capabilities and levels.

Methods: This study calculates the biodiversity information disclosure index for Chinese enterprises based on an analysis of 11,867 enterprise social responsibility and environmental, social and governance (ESG) reports from 1,714 listed enterprises between 2006 and 2022, utilizing internet crawling technology for data collection. Employing quantitative analysis methods, the research examines the current status and primary issues related to biodiversity disclosure, ultimately constructing an econometric model to explore the financing effects of biodiversity information disclosure from the perspectives of financing constraints, costs, and outcomes.

Results: The findings indicate a continuous increase in both the number and proportion of enterprises disclosing biodiversity information in China, demonstrating a stable growth trend with modest annual increases. However, challenges persist, including low disclosure quality, heightened industry polarization, and significant heterogeneity among enterprise types. Furthermore, biodiversity information disclosure exhibits significant effects on financing. Specifically, each increasing unit in enterprise biodiversity information disclosure can effectively reduce enterprise financing constraints by 2.02% to 5.07%, lower the cost of enterprise debt financing by 2.51% to 2.78%, lower the cost of enterprise equity financing by 1.55% to 1.83%, and facilitate adjustments to the enterprise financing structure, thereby decreasing (increasing) the proportion of debt (equity) in financing by 2.19%.

Policy Implications & Contributions: In light of these findings, policy recommendations are proposed in the study, including the implementation of financing incentive mechanisms, the establishment of standardized disclosure protocols, the monetization of biodiversity value, and an emphasis on disclosure trends among non-key industries. These recommendations are designed to enhance enterprise engagement in biodiversity protection and to mobilize enterprise resources towards the promotion of biodiversity-friendly practices within industry development.

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Activation and Termination of Strigolactone Signal Perception in Rice
Ruifeng Yao, Daoxin Xie
Chinese Bulletin of Botany    2024, 59 (6): 873-877.   DOI: 10.11983/CBB24163
Accepted: 04 November 2024

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Strigolactone (SL) is a novel plant hormone that regulates important growth and developmental processes such as plant branching. In rice, the SL receptor D14 perceives SL signals, binds with the F-box protein D3, and recruits the transcriptional repressor D53, inducing the ubiquitination and degradation of D53, thereby triggering signal transduction and inhibiting tillering. A recent study discovered that nitrogen limitation induces SL biosynthesis in rice to activate the receptor D14, triggering SL signal transduction. Concurrently, nitrogen limitation also induces phosphorylation of the N-terminal disordered region (NTD) of D14, reducing the ubiquitination and degradation of receptor D14, thereby further enhancing SL perception. Through these two synergistic mechanisms, nitrogen limitation stimulates SL signal transduction, strongly inhibiting tillering and enabling rice to adapt to low nitrogen stress conditions. The study also found that the D14-D3 interaction induced by SL promotes the ubiquitination and degradation of D14, thereby mediating the termination of SL signal perception. These significant findings elucidate the mechanisms of activation and termination of SL perception in rice, revealing the crucial regulatory role of SL signals in controlling rice tillering under low nitrogen stress. This would provide key insights into plant adaptation to nutrient scarcity and guide the precise improvement of crop architecture and molecular breeding of rice for reduced fertilizer use and increased yield.

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