Aim: The aim of this study is to catalogue and summarize new taxa of the order Hymenoptera published in 2021.

Methods: In 2021, 355 journal publications on new taxa in the order Hymenoptera were obtained and analyzed by researching the available zoological databases.

Results: Based on the collected journal publications, there were 1,152 records on the new taxa of Hymenoptera for 66 families and 416 genera in 21 superfamilies, including 5 new families, 4 subfamilies, 83 new genera, 3 subgenera, 1,054 new species, and 3 new subspecies. A total of 980 extant hymenopterans from 52 families and 332 genera in 18 superfamilies were recorded in 309 of the 355 journal publications, including 2 new families, 26 new genera, 3 new subgenera, 946 new species, and 3 new subspecies. Another 46 journal publications on fossil Hymenoptera recorded 172 extinct Hymenoptera from 27 families and 86 genera in 14 superfamilies, including 3 new families, 4 new subfamilies, 57 new genera, and 108 new species. In 2021, 235 new taxa from 34 families and 91 genera in 17 superfamilies were recorded in 83 of the 309 relevant journal publications in China. These include 3 new genera (1 extinct) and 232 new species (2 extinct). The above 2 new extant genera were described from Taiwan and Zhejiang, China. The five Chinese provinces with the most new species published in 2021 are Yunnan, Zhejiang, Fujian, Xizang, and Xinjiang. Based on the publications in 2021, Ichneumonoidea was the superfamily with the highest number of new species, accounting for 32.5% (307/946), 19.4% (21/108), and 37.0% (85/230) of the extant, extinct, and Chinese new species in the Hymenoptera database, respectively. Grouping the extant Hymenoptera new species by continental regions and subregions shows that 56.9% (538) of the new species were discovered in Asia, 28.6% (271) in East Asia and 24.3% (230) in China, which tops the list of regions, subregions, and countries with the most new species. Of the 355 publications in 76 journals, 348 were published in English, 4 in Chinese, and 3 in French.

Conclusion: These results indicate that the taxonomy of Hymenoptera in China plays an important positive role in expanding our understanding of the order Hymenoptera around the world.

Aims: The origin and evolution of biodiversity is one of the most important scientific questions in the field of life sciences. The accumulation of multi-omics data and the development of related analytical techniques have greatly promoted our understanding and research on the origin and evolution of biodiversity, thereby making it possible to clarify the processes and reveal the mechanisms of biological evolution events. On the occasion of the 30th Anniversary of the inaugural of Biodiversity Science, this paper briefly retrospects the important research progress of the origin and evolution of biodiversity in recent years, aiming to help the readers comprehend the present development on this topic.
Progresses: In the past decade, research on the origin and evolution of biodiversity has made many significant advancements, including the reconstruction of the tree of life, the spatiotemporal distribution pattern of biodiversity, the concepts of species, speciation, and adaptive evolution, and the origin and diversification of new characters. Based on these advancements, phylogenetic relationships among many taxa were clarified; some historical causes of biodiversity distribution patterns were revealed; some new species concepts and speciation models were proposed; and some molecular mechanisms of new characters and functions were revealed.
Prospect: We believe that the more accurate reconstruction of the tree of life, in-depth mining of genomic data, and the multidisciplinary integration would be the main trends in biodiversity research.

Multidrug and toxic compound extrusion (MATE) transporters are also known as detoxification efflux carriers (DTXs) that are ubiquitously present in prokaryotes and eukaryotes. MATE transporters are membrane proteins usually with twelve transmembrane regions arranged in a "V" shape. MATE/DTX transporters are mainly involved in the modulation of iron homeostasis, transport of inorganic anions and secondary metabolites, the detoxification of heavy metals and xenobiotics, regulation of growth and development, and response to diseases and abiotic stress in plants. This review summarizes the research progress for the discovery, phylogeny, structure, and function of MATE/DTX family proteins and may provide a reference for the stress tolerance improvement of crops and forages with MATE/DTXs.

Background & Aims: Biodiversity is a key feature of ecosystem complexity. Understanding the origination and maintenance of biodiversity has been a major task of theoretical ecology research. Here we reviewed recent advances in theoretical studies on biodiversity.
Progresses: We first summarized recent progress in modern coexistence theory and process-based community assembly theory. We then synthetized different approaches for inferring the presence and strengths of species interactions. Lastly, we introduced the general framework of eco-evolutionary models and their applications in biodiversity research.
Prospects: We ended with a brief discussion on future developments of biodiversity theory, particularly in integrating processes across scales and predicting biodiversity responses to global changes.

Aims: Vascular plants provide most of the planet’s biomass. Thousands of new vascular plant species have been discovered and described every year recently. Timely analysis of the published data of new vascular plants taxa can show the research hotspots of vascular plant taxonomy in details and provide reference data for studies of related fields such as botany, ecology, and conservation science.

Methods: The data were derived from the IPNI (https://www.ipni.org/), Tropicos (https://www.tropicos.org/), WCSP (https://wcsp.science.kew.org/) and The Plant List (http://www.theplantlist.org/). Statistics of new taxa of vascular plants published in 2021 were available as of April 16, 2022 excluding new combinations, new statuses or new names and bryophyte data.

Results: In 2021, at least 2,219 new taxa of vascular plants were described worldwide, including 1 new subfamily, 7 new tribes, 7 new subtribes, 68 new genera, 7 new subgenera, 15 new sections, 8 new subsections, 10 new series, 1,979 new species, 46 new subspecies, 59 new varieties, and 12 new forms. These new taxa belong to 185 families and 881 genera, among which Orchidaceae, Asteraceae and Rubiaceae had received more attentions. In 2021, 2,219 new taxa of vascular plants were described worldwide in 165 journals and 14 books by 1,942 scholars, of which 42 authors have published more than 11 new taxa. Phytotaxa and PhytoKeys were the top two journals in terms of the numbers of new taxa of vascular plants published in 2021 and published 586 and 112, respectively. Among the 2,096 new species and infraspecific taxa, 1,940 belonged to angiosperms, 147 to pteridophytes, and only 9 to gymnosperms, among which Orchidaceae are the most, with 227. The 2,096 new species and infraspecific taxa were from 115 countries and regions in the world. Asia and South America were the hotspots of discoveries of new species and infraspecific taxa, with 837 and 571, respectively. By country, China, Brazil, and Madagascar were the top three with the most new species and infraspecific taxa discovered in 2021, with 283, 269, and 169, respectively. Considering the fact that IPNI added 797 new species described in 2020 after February 1, 2021, we estimate ca. 700 new species described in 2021 will be added in various databases after April 16, 2022. This will increase the number of new species (and infraspecific taxa) published in 2021 to ca. 2,800, which is comparable to the annual numbers since 2001.

Background & Aim: Since 2004, the Chinese Forest Biodiversity Monitoring Network (CForBio) has established 23 large forest dynamics plots along a latitude gradient ranging from cold temperate forests to tropical forests in China. The forest dynamics plots include about 1,893 species, representing one-sixth of the known tree diversity in China. With > 700 papers and > 400 papers published in international journals, CForBio researchers have made significant contributions toward understanding mechanisms of forest community assembly. This review summarizes the progresses achieved by CForBio researchers, including knowledge of the spatiotemporal patterns of plant communities, the roles of habitat filtering, biotic interactions, effects of dispersal limitation and regional effects in structuring plant communities, and the application of new technologies in understanding community assembly.
Review Results: (1) Habitat filtering and dispersal limitation jointly affect the diversity patterns such as species-area relationship and β diversity, but their relative effects vary among plots and across scales. (2) Habitat filtering generally plays an important role in forest community assembly. However, it is difficult to quantify its relative importance. (3) Conspecific negative density dependence (CNDD) is prevalent in these CForBio plots across latitudes. In addition, the strength of CNDD is found to be mediated by plant mycorrhizal type, and varies with life history, functional traits and environmental change. (4) Dispersal limitation predominantly shapes community structure at local scales, whereas regional effects, such as regional pool size and geological history, strongly determine spatial patterns of biodiversity among communities over broader biogeographic regions. (5) New technologies provide novel ways to advance studies of community assembly from both macro and micro-perspectives. On one hand, remote sensing enables us to monitor forest community biodiversity from local to large scales in a cost-effective way. On the other hand, transcriptomics and metabolomics enable us to precisely infer molecular mechanisms of community assembly.
Perspectives: This review also discusses the limitations in current community assembly studies and proposes some issues and potential topics to be considered for future studies. We discuss the vital role of CForBio in promoting the application and future development of community assembly studies, including (1) the spatiotemporal scale problem; (2) the multi-dimensional (taxonomic, functional, and phylogenetic diversity) and multi-trophic biotic interactions; (3) the advantages of interdisciplinary and multipath approaches such as the “observational evidence-controlled experiment- ecosystem model” methodology; (4) the effect of global change on community assembly; and (5) the applications of community assembly findings for addressing forest management challenges. In conclusion, the long-term forest biodiversity monitoring is fundamental for a comprehensive understanding of community assembly and serves as an important platform for bridging studies on theories of assembly and on forest management challenges.

Aim: Each year, more than 220 species from China are documented as new species. However, much of this information has yet to be updated in international databases. Here we aimed to update the annual report with the newly discovered taxa and name changes of existing plants in China from the year 2021.

Methods: Information on newly discovered taxa and name changes for Chinese higher plants were collected by reviewing 222 journals and monographs, where 380 articles published in 62 journals and 2 monographs concerning the new taxa and nomenclatural changes of higher plants published in 2021. For each species, we compiled the scientific name, author, location, type specimen, and other relevant information.

Results: In 2021, a total of 342 new taxa of higher plants from China were reported, including 1 new family, 11 new genera, 289 new species, 3 new subspecies, 18 new varieties, and 20 new forms. The newly described species belong to the Marchantiophyta (5 species), Bryophyta (4 species), Lycopodiophyta (3 species), Pteridophyta (22 species), Gymnospermae (2 species), and Magnoliophyta (253 species). A total of 111 new species had been published with detailed molecular evidence, 76 of which were considered threatened species according to IUCN standards. Four provinces in southwestern China, including Yunnan, Xizang, Sichuan, and Guangxi, were the sources of the majority of the discoveries. The species found in these regions account for 63.3% of the total reports collected in our review. Taiwan, Hainan, Yunnan, Zhejiang, and Guangdong have the highest densities of newly discovered species. Additionally, we identified 134 new combinations and new rank names. We identified 9 replacement names transferred from other species distributed across China. Sixty-two plants were reported as novel to China, 92 names were given as synonyms of 62 taxa, 7 names were revised, and 2 genera and 10 species were re-recognized. Further, 49 names were designated lectotypes or neotypes, 9 species were rediscovered, and 7 were considered no longer present in China.

Conclusion: In 2021, a net increase of 364 new plant taxa of higher plants occurred in China, accounting for 0.98% of the total growth. Also, 230 plant names have been changed, accounting for 0.62% of total changes. The high number of new plant species found in China has been consistent and held in the year 2021, implying that the country, mainly located in the subtropical regions of the northern hemisphere, still has many plants waiting to be discovered.

Background: Innovation in the application of intelligent sensors, artificial intelligence, and information technology has greatly increased the potential for global biodiversity conservation and restoration.
Aims: Considering the significant advances in wildlife monitoring using infrared cameras at home and abroad, combined with a literature review, this paper aims to assess the current status and relevant topics from wildlife camera-trapping monitoring research in China since 2011. Combined with important research cases at home and abroad to explore the cutting-edge issues of camera-trapping monitoring research, this paper will provide suggestions for the future of camera-trapping monitoring research in China.
Main issues: The main contents of this paper are as follows: (1) We conducted and summarized a literature review of wildlife camera-trapping monitoring research in China during the past 30 years (1991-2021); (2) By reviewing major research cases in China since 2011, we assessed five primary topics such as technical methods, species discovery and inventory, morphology and behavioral research, ecological research, and conservation and management; (3) Utilizing recent research cases abroad, we evaluated cutting-edge trends in the field of infrared camera monitoring research; and (4) We provide relevant suggestions for the future development of wildlife camera-trapping monitoring research in China.
Conclusions: Through our review, this paper underscores the innovative trend of infrared camera technology application and development at home and abroad in wildlife monitoring and research during the past decade. We provide a reference basis for China’s future development in this field, so as to better serve the construction of China’s biodiversity monitoring and research network as well as the construction of protected areas systems centering on national parks. Finally, we promote the construction of a national ecological civilization by providing a scientific basis for making decisions in ensuring ecological security and biosafety.

Background & Aim: Marine biogeography is a subject investigating the spatiotemporal distributions of marine organisms and the processes and drivers of changes in species distributions. Research in marine biogeography is promising for the conservation of marine biodiversity and the stability of ecosystem functioning and crucial for the sustainability of utilizing marine resources. Species distribution models (SDMs) are an important tool for assessing and predicting the biogeographical changes in marine species distributions.

Progresses: This review consists of three main parts: (1) the development process and current status of marine biogeography studies in China; (2) the commonly used approaches to answer the questions related to marine biogeography with a special focus on SDMs; (3) the research trends and hotspots of marine biogeography studies in China, mainly concerning the shifts in species distribution under global changes, phylogeography of marine species, biological invasion, population connectivity, marine conservation planning, marine ecological restoration and recovery, adaptation of marine species to extreme environments, as well as management of marine fisheries and mariculture planning.

Prospects: In this review, we further outlined the prospects for the future development of marine biogeography and emphasized the importance of optimizing SDMs. We also called for developing comprehensive databases of marine environments and organisms to strengthen the integration of marine biogeography with other disciplines. We hope this review will provide useful insights for the studies of marine biogeography in China.

Stable hydrogen and oxygen isotope analysis provides an important tool for calculating plant root water uptake amount, determining the contribution to plant water source, and evaluating plant water use strategy, and is thus of great relevance to ecohydrological studies with respect to exploration of the water transmission mechanism of the atmosphere-vegetation-soil system. However, the stable hydrogen and oxygen isotope ratios (δ²H and δ¹⁸O) offset between soil and xylem water can cause inconsistency in the calculated contribution rate of plant water source, but the reasons for differences in hydrogen and oxygen isotope results are unclear. In this review, we first briefly introduced the phenomenon of hydrogen-oxygen stable isotope ratio offset; secondly, the framework was constructed along the water transport path of the soil-plant-atmosphere continuum. We systematically expounded the natural effects of δ²H and δ¹⁸O offset in three interfaces (plant-atmosphere interface, soil-atmosphere interface, and root-soil interface) and two spaces (plant and soil layer). At the same time, we summarized the methodological artifacts that are associated with soil and xylem sample extraction and δ²H and δ¹⁸O determination technologies. Finally, we identify main knowledge uncertainties according to the existing research progress; and highlight three areas that deserve future research attention: the acquisition of isotope spatiotemporal data, the cause of micro-scale isotope offset, and the optimization of extraction and determination technology.

With the increase in atmospheric CO₂ concentration caused by human activities, the global climate continues to warm. The past five years have been the hottest since the record of temperature. High temperature stress has become one of the main adverse factors affecting plant growth and development. Photosynthesis is the basis of life activities on earth, and it is highly sensitive to fluctuation in environmental factors. Understanding the response of plant photosynthesis under high temperature stress can provide a scientific basis for exploring the physiological and ecological mechanisms of plant tolerance to high temperature stress, cultivating new heat-tolerant varieties and taking reasonable measures to adapt to extreme climate in the future. In this paper, the effects of high temperature stress on the process of photosynthetic electron transfer and carbon fixation in plants were reviewed, and the effects of light on photosynthesis under high temperature stress were comprehensively analyzed from the perspective of light quality and light intensity. This paper also expounded the ways and mechanisms to improve the tolerance of plants to high temperature stress from the aspects of plants themselves and exogenous mitigating substances. Meanwhile, the research direction of plant photosynthesis response to high temperature stress and the application of multi-histology combined analysis in the comprehensive study of the mechanism of plant tolerance to high temperature stress were prospected.

Soil organic carbon (SOC) pool is the largest carbon pool in terrestrial ecosystems and plays an important role in regulating the global carbon cycle and climate change. The inputs of nitrogen (N) and phosphorus (P) induced by anthropogenic activities and atmospheric deposition of N and P increase the availabilities of N and P in terrestrial ecosystems, which in turn will have important impacts on SOC dynamics via regulating plant growth and microbial activity. At present, many field-manipulation experiments regarding the effects of N addition and/or P addition on the dynamics of SOC have been conducted worldwide, and some breakthroughs and progress have been made, but a systematic and comprehensive review and summary of them is still lacking. By taking the effects of N addition and/or P addition on the inputs and outputs of soil carbon as the starting point, we systematically reviewed the effects of N addition and/or P addition on SOC and the potential mechanisms from three aspects: the size, fraction and molecular composition of SOC. According to the results of previous studies, N addition, P addition, and combined N and P (N + P) addition generally stimulate the size of SOC pool. The stimulation effect of N is caused by the decreased carbon outputs from microbial decomposition and/or the enhanced carbon inputs of plant above- and/or below-ground under N addition. However, the stimulation effect of P may be dominated by the enhanced carbon inputs of plant above- and/or below-ground under P addition. As for the fractions of SOC separated by particle-size or density fractionation, N addition promotes both labile fractions (particulate organic carbon or light fraction carbon) and stable fractions (mineral-associated organic carbon or heavy fraction carbon) of SOC, but reduces the proportion of stable carbon fractions to total SOC. In addition, the effects of N addition on the molecular composition of SOC are complex and diverse, and are regulated by environmental and experimental factors such as soil N availability, N addition rate, and N fertilizer form. Compared with N addition, studies on the effects of P addition and N + P addition on the fraction and molecular composition of SOC are very limited, and the associated mechanisms for the effects of P addition and N + P addition on these variables are still unclear. To improve our understanding, we propose four aspects of studies that need to be strengthened in the future, including the effects of P addition on SOC in different types of ecosystems (especially tropical forests), the role and relative contribution of plants and microorganisms in regulating the changes of SOC and its fractions under N addition and/or P addition, the effects of long-term N addition and/or P addition and their interactions on SOC, and the effects of N addition and/or P addition on SOC in deep soils (below 20 cm).

Background: Climate change and increased human activity lead to ecosystem degradation, loss of biodiversity and reduced capacity to sustain the biosphere, as well as significantly constrain sustainable socio-economic development. Ecosystem degradation continues to be a global concern, and extensive conservation and restoration efforts have been implemented worldwide to address this problem.
Progresses: In this paper, we first explore the concepts and theories of ecosystem restoration and how they developed. Secondly, we summarize key elements associated with ecosystem restoration, e.g. ecosystem services and values, biodiversity conservation, climate change and carbon storage, nature reserves, monitoring systems and adaptive management, and equity and multi-participation. Then, we review the problem of ecosystem degradation and the extent of restoration efforts in China’s forests, grasslands, rivers and wetlands, and marine and coastal zones. We explore the progress and shortcomings of three measures, in particular, China’s ecological conservation red line scheme, ecosystem restoration in protected areas and ecological protection and restoration in national space planning.
Prospect: We conclude this paper by exploring integrated conservation and systematic land management approaches to address ecosystem degradation. We discuss the policies and channels of diversified financing of ecosystem restoration, exploratory practices in wilderness ecological conservation and restoration, applied research in urban ecosystem restoration, and ecosystem restoration for the conservation and maintenance of biodiversity to inform further research and practical application of ecosystem restoration efforts in China.

Phylogenetics is a discipline reconstructing evolutionary relationships of organisms. With improvements in sequencing technique, analytic methods, and computation power, the molecular data have been used widely and have promoted greatly the rapid development of molecular phylogenetics. The phylogenetic tree has become a powerful tool in many areas of biology, such as ecology and comparative biology. Currently, phylogenetic studies mainly focus on phylogenetic tree reconstructions by using various software, however, some fundamental principles or matters that should be paid attention when performing phylogenetic analyses are sometimes weakened or even ignored. Here, we present the workflow and methods in details for phylogenetic tree reconstruction based on molecular data, including taxon sampling, molecular marker selection, sequence alignment, partitioning and model selection, combined analysis of multiple markers, and topological test. Currently, the widely used methods of phylogenetic reconstructions are maximum parsimony, maximum likelihood, and Bayesian inference. We thereby provide the detailed operating flows and corresponding commands for these three methods, respectively. We expect this paper will provide a reference for relevant researches.

Phosphorus (P) is an essential but limited nutrient for plant growth, and global climate changes may affect soil P cycling and further aggravate P limitations in the soil. In this review, we focused on the response of plant P acquisition strategies to climate changes and subsequent influences on ecosystem productivity. By searching and analyzing the existing literatures, we summarized the P acquisition mechanism of plants and their response to global climate changes from following aspects: 1) plant P starvation response mechanisms; 2) plant P acquisition pathways and strategies; 3) involvements of soil microorganisms in plant P utilization; and 4) responses of plant P acquisition strategies to global climate changes (e.g., warming, nitrogen deposition and precipitation changes) and the underlying mechanisms. The review is expected to deepen our understanding of plant adaptation to low-P stress under the future climate scenario, and can also provide a theoretical basis for nutrient management in agriculture.

Quantitative estimation of the contribution of predictary variables to community composition is a hotspot in community ecology. However, multicollinearity and joint contributions among predictors make it difficult to estimate the importance of predictor in specific analysis scenarios. To address this issue, the “rdacca.hp” package provides a new quantitative indicator by introducing the concept of hierarchical partitioning (HP) to assign individual effects for individual predictors (or groups of predictors) across all possible model subsets. The package solves the problem of estimating the relative importance of predictors with multicollinearity in canonical analysis. The “rdacca.hp” package has become an important tool for community ecological analysis. To further promote users’ understanding and use of the “rdacca.hp” package, we demonstrate the general steps for using this package in canonical analysis with an example analyzing the important environmental and spatial drivers that shape the oribatid mites (Oribatida) community. Subsequently, we conduct a bibliometric analysis of recent studies using “rdacca.hp” package. The results show that, since its launch, the package has been widely used as a fundamental quantitative framework in ecology, environmental science and related disciplines. Finally, we discuss the further application and extension of the “rdacca.hp” package. In conclusion, this paper aims to advocate the understanding and application of the “rdacca.hp” package for domestic researchers.

Background & Aims: Increasing attention is focused on global change and loss of biodiversity. Genetics is an important tool in the conservation of threatened species, which have greatly promoted our understanding of diverse areas in conservation biology. However, some key scientific issues in conservation biology, including evolutionary history, endangered mechanism, genetic basis of adaptive evolution and inbreeding depression, are remain to be understood. Spurred by technological advances in high-throughput sequencing, conservation genomics are developed by using of new genomic techniques to solve problems in conservation biology, providing new approaches to deep understanding of the key issues in conservation biology. This paper briefly summarizes the important research progress in the conservation genomics based on whole genome resequencing, aiming to promote the conservation biology of threatened plant in China.
Progress: Whole genome resequencing, being the highest genomic resolution among current methods in conservation genomics, has made many significant advancements, including classification of phylogenetic relationships between unresolved taxa, the reconstruction of population structure, genomic diversity, demographic history, adaptive evolution and inbreeding depression. Based on these advancements, conservation taxa and conservation units are identified, the evolutionary history and endangered causes of species are revealed and the genetic basis of adaptive evolution and inbreeding depression are partly revealed.
Prospect: As whole-genome resequencing provides deep insights into the key issues in conservation biology, with the improvements of even higher throughput and lower cost, whole-genome resequencing will be a routine task in conservation biology studies.

Background & Aim: Analyzing biodiversity status requires multi-spatial scale, continuous monitoring across different ecosystems due to its heterogenous nature in both space and time. Therefore, monitoring networks are necessary for biodiversity conservation research. Biodiversity monitoring networks at the global, regional, and national scales, represented by GEO BON and APBON, have flourished. China has established a long-term monitoring network for ecosystems and species at the national scale. and the China Biodiversity Observation and Research Network (Sino BON) was launched in 2013 with strong support from the Chinese Academy of Sciences and the Ministry of Finance.
Review Results: Sino BON includes 10 subnetworks specialized at monitoring animals, plants and microbes and an additional network for near-ground remote sensing, which covers 30 main sites and 60 affiliated sites in China. Currently, Sino BON has created a research platform for multi-trophic interactions among soil microorganisms, insects, large mammals, underground forests to forest canopies. This platform provides an understanding of biodiversity change and its driving factors at the national level and may be used in protecting biodiversity and sustainable utilization of biological resources.
Perspectives: For further progresses, monitoring technology, monitoring areas, data standards and integrated information platforms require further development.

Background & Aims: Alien plant invasion has significantly threatened native biodiversity, ecological security, socio-economic development, and human health. Consequently, exploring the mechanisms of alien plant invasion and its ecological impacts are of great importance to the ecologically sustainable development of our country. Both questions are also key topics in the field of invasion ecology. Over the past decade, ecologists have conducted much research and achieved fruitful outcomes, providing theoretical guidance for the prevention and management of invasive alien plants and biodiversity conservation.
Progresses: Based on domestic and international studies in this field over the past decade, the present article reviews the progress of plant invasion ecology, focusing on the following three aspects of the field. First, we present the roles of species characteristics, biotic and abiotic environments on alien plant invasion. Second, we review the impacts of alien plant invasion on native ecosystems. Third, we briefly introduce the term ‘native plant invasion’ as an analog to alien plant invasion, as well as applications of multi-omics technology in the area.
Prospects: The review looks ahead to further developments in invasion ecology, including that (1) multiple species experiments rather than single species experiments are more suited to obtaining gerneralizable findings; (2) the geographical scale is increasing, such as from local scale to latitudinal gradient pattern; (3) more studies are integrating multiple invasion theories, rather than one hypothesis, into a unified framework.

Background & Aims: We reviewed progress on insect biodiversity research over the past 30 years and further analyzed the trends, focusing on varied study systems (e.g. forest, grassland and agriculture etc.) and important functional insect groups, such as pollinators, herbivores and predators.
Progresses: Declines of insect abundance and diversity are being reported worldwide. Anthropogenic disturbance, climate change, and other factors contribute to this crisis.
Strategies & Prospects: Studies of insect biodiversity have expanded from early comparisons of species richness on composition to multiple dimensions of diversity. Current studies include both in-depth work on morphological diversity and much deeper consideration of genetic, phylogenetic, and functional diversity. Moreover, the studies’ scale has expanded from local to global. The development of morphometrics and phylogenetic bioinformatics further contributes to understanding evolution and global patterns in diversity. We also need to pay more attention to topics on integrative taxonomy on functional insect groups, functional diversity, insect diversity within canopy, and species interaction networks.

Aims: Wild Plants with Extremely Small Populations (WPESP) are plant species with high risk of extinction that are in urgent need of conservation. This concept has become a hotspot of biodiversity conservation in China since it was first proposed. In 2010, China officially launched the Implementation Plan of Rescuing and Conserving China’s WPESP (2011-2015), which initiated conservation research efforts and achieved successful progress.
Methods: We conducted a topic search on Web of Science and on China National Knowledge Infrastructure (CNKI) with “extremely small population*” and “plant” as the search terms. We reviewed the research results and achievements from academic papers, dissertations, and conference papers in order to evaluate the conservation of WPESP in China.
Results: WPESP research provides an important theoretical basis to guide conservation practice. We systematically reviewed research on the conservation of WPESP in recent years from six aspects: (1) the survey and monitoring of population, community and habitat, (2) adaptation, (3) genetic diversity, (4) reproductive biology, (5) endangered mechanisms, and (6) dynamic models. In this paper, we reviewed WPESP conservation progress from five aspects: (1) in situ conservation, (2) ex situ conservation and germplasm conservation, (3) reintroduction, (4) artificial propagation, and (5) technical regulation system construction. We also proposed several priorities for future conservation research.
Conclusions: Based on current theoretical and practical research, we propose five priorities for future conservation research of WPESP in China. We suggest that the conservation list should be adjusted and improved periodically. Researchers should highlight the observation and prediction of population structure, reinforce research on the formation and recovery mechanisms of small populations and conduct long-term systematic studies of specific species. The WPESP concept should be promoted at international levels to increase its influence. We hope this review may provide a reference for national biodiversity protection and ecological civilization construction.

Background: Microbes, collectively bacteria, fungi, archaea, and viruses, are the organisms that are widely distributed on earth, with a huge number of individuals and high diversity of species and genes. In order to adapt to various habitats, microbes have developed many life strategies, such as saprotroph, parasite and symbiont, and consequently contribute broadly to biogeochemical cycles, ecosystem succession and stability, environmental remediation, and human health. Research on microbial diversity had been limited by traditional monitoring techniques. Recently, benefiting from the development of high-throughput sequencing techniques and bioinformatics, understanding of microbial diversity has been significantly advanced.
Results: This study reviews the progress on the diversity distribution pattern and maintenance, community assembly and functional trait of microbes. Altitudinal distribution patterns and drivers of bacterial, archaeal, and fungal diversity have been demonstrated. Selection, dispersal, speciation and drift processes are important for the community assembly of bacteria, archaea, and fungi. Bacteria and fungi are diverse in functional traits, such as morphology, physiology and biochemistry, growth and propagation, dispersal and genome. Future study in microbial diversity should focus on fungal metagenomics, relationship between microbial diversity and ecosystem function, and ecosystem function of microbial interaction network.

Riboflavin is the precursor of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) that serve as an indispensable cofactor to maintain normal metabolism, which plays pivotal roles in mitochondrial electron transport chain, citric acid cycle, β-oxidation of fatty acids, branched-chain amino acid catabolism, redox homeostasis, chromatin remodeling, DNA repair, apoptosis and secondary metabolite biosynthesis. Riboflavin deficiency will cause metabolic disorders and a series of defective phenotypes, and death in the most severe cases. Among the living organisms, microorganisms and plants can de novo synthesize riboflavin, but humans and animals can only obtain it from food. At present, the regulation of riboflavin biosynthesis in microorganisms has been clearly studied, but the mechanism of riboflavin transport and metabolism in plants is still not clear. Isolating riboflavin deficient mutants is crucial for analyzing the molecular mechanisms of riboflavin biosynthesis, transport, and metabolism in plants and the effect of riboflavin on plant growth and development. Here we review first the riboflavin biosynthetic pathway and its key enzymes, and then the processes of riboflavin involved in plant growth and development in detail, and finally give prospects for plant riboflavin research.

Background: Botanical gardens have deep historical roots, drawing inspiration from the ancient “Shennong Herbal Garden” that has played a pivotal role in China’s herbal civilization. While the origins of modern botanical gardens can be traced back to the medicinal gardens of early European universities, their predecessors lie in medieval herb gardens, representing the rich heritage and evolutionary path of traditional botany and ancient gardens.

Review findings: Over the course of 500 years since the European Renaissance, modern botanical gardens have evolved into vital centers of science and art. They have transcended their roles as mere repositories of flora and fauna to become institutions that seamlessly blend nature, culture, art and science. These gardens have consistently embraced new challenges, adapted to changing circumstances, and taken on new missions, propelling them into an era of sustainable development, in which multiple models coexist harmoniously and at the heart of this transformation lies the core mission of ex situ conservation.

Recommendations: Looking ahead, the construction of China’s national botanical gardens should focus on creating efficient ex situ conservation networks while adhering to rigorous scientific standards. This entails implementing exemplary professional curation practices that bridge the historical legacy of botanical gardens with contemporary conservation imperatives. Prioritizing ex situ conservation efforts, China’s botanical garden community should curate national living collections and conduct high-level scientific research. This approach should be rooted in a renewed emphasis on the value of ex situ flora, ultimately contributing to the establishment of a world-class national botanical garden system. This system will advance plant conservation research, facilitate resource exploration and application, and foster sustainable economic and social development.

Trade-offs among plant functional traits reflect the trade-off relationships between resource acquisition and conservation of different plants, which are of pivotal importance for understanding the mechanisms by which plants adapt to the environment. However, due to the heterogeneity of the soil environment and the limitations of technical means, the study of below-ground root functional traits and their interrelationships is currently lagging behind that of above-ground functional traits. Traditionally, fine roots have been defined as all roots ≤2 mm in diameter. The acquisition and utilization of soil resources by plants depends on architectural traits, morphological traits, chemical traits and biotic traits of fine roots and so on, including fine roots associations with mycorrhizal fungi. Recently, the root economics space has been proposed, which demonstrates the existence of trade-offs between the do-it-yourself strategy of plants increasing their own root surface area and the outsourcing strategy of investments into fungal symbionts for enhanced nutrient mobilization from hyphal expansion, in addition to the traditional trade-offs between fast (high nitrogen content and metabolic rate) and slow (high tissue density) investment return. It was found that thin-root species obtained soil resources mainly by increasing specific root length, whereas thick-root species relied more on mycorrhizal fungi. However, the carbon economy of resource acquisition through the root and mycorrhizal hyphal pathways remains unclear. In future research, the key issues of root functional traits were suggested as follows: 1) for research methods, it is urgent to establish a unified set of definitions and research methods for root classification, sampling, storage, functional traits and their research methods; 2) for research traits, the research of “hard” traits of fine roots should be strengthened; 3) for the trade-offs between functional traits of fine roots, it is of great significance to strengthen the study of the trade-offs between construction costs and resource benefits between plant roots and mycorrhizal fungi.

Background: Maintaining biodiversity is crucial to human beings. In recent years, the concept of Essential Biodiversity Variables (EBVs) has provided new insights into large-scale and long-time biodiversity monitoring. Looking at EBVs from a national monitoring perspective, some EBVs are anticipated to correspond with remote sensing-derived variables since remote sensing is the potential methodology able to offer globally qualified data with a high spatial and temporal resolution. However, the academic community still lacks consensual remote sensing variables that can correspond with EBVs solidly.
Aims: This study aims to (1) review the current researches of remote sensing on EBVs; (2) propose a new criterion called “repeatability” on the basis of the current four remote sensing biodiversity product prioritization criteria; (3) construct a list of remote sensing products for EBVs in China based on these criteria.
Problems & Prospects: First of all, there is a lack of systematic research on EBVs in China. Second, the potential of domestic satellites is not exploited enough. Third, some EBVs remote sensing products are not yet “repeatable”. In the future, there is a need to promote cooperation among scientists in the fields of ecology, remote sensing, and aerospace to further promote scientific research on the combination of EBVs and remote sensing.

Understanding the response patterns and potential mechanisms of structure and function in grassland ecosystems to nitrogen (N) enrichment is essential to evaluate ecological impacts of external N input. The muti-level N manipulative experiment offers the possibility to explore the nonlinear response patterns and associated mechanisms of structure and function in grassland ecosystems to additional N input. In this review, we summarized the impacts of additional N inputs on community diversity, carbon (C) and N cycling in grassland ecosystems around the world. Numerous studies illustrated that N enrichment induced the decline of plant species diversity, plant functional diversity and soil bacteria richness in grassland ecosystems, yet the change of fungal diversity was not significant. Above- and below-ground plant productivity showed different responses to N input: aboveground plant productivity exhibited initial increasing and subsequent saturation trends, but root productivity and root:shoot ratio showed downward patterns, and root turnover rate appeared a single-peak pattern of first increasing and then decreasing with the continuous increase of N addition rate. Meanwhile, different C decomposition processes responded variously to N enrichment. Specifically, litter decomposition rates exhibited multiple response of “exponential decrease, liner increase or insignificant change with N addition level”. However, the relationship of soil respiration and CH₄ consumption with N addition was dominated by a single peak trend of increasing at low to medium N levels but declining at high N levels. Likewise, different soil C fractions showed multiple response patterns to N input. N addition generally stimulated soil C storage and particulate organic C accumulation, while the mineral-associated organic C exhibited divergent responses of “increase, unaltered, and decrease” along the N addition gradient. In addition, plant N uptake exhibited initial increasing and subsequent situation trends along N addition gradients, while different soil N transformation processes showed differentiated responses along N addition gradients and the relationship between N₂O emission and N addition rate varied among various grassland ecosystems. An exponential increase of N₂O fluxes with N addition rate was observed in temperate grasslands, while the patterns of first increase and then saturation or linear increase of the N-induced changes in N₂O emissions had been discovered in alpine grasslands. Future studies should focus on the nonlinear responses of rhizosphere processes and phosphorus (P) cycle to external N input, and also explore potential mechanisms from the aspect of multi-dimensional biodiversity changes.

Plant functional traits are generally defined as relatively stable and measurable morphological, physiological, and phenological characteristics of plants that can indirectly affect plant growth, reproduction, and survival. Years of development have enabled the standardization of the definition, connotation, and measurement methods of plant functional traits. Now, the intraspecific and interspecific variation, biogeographic patterns, coordination, and the evolution of plant functional traits have been well explored. The gradual development of global plant functional trait databases since the 1990s has led to the expansion of plant functional traits beyond individual and local scales. Regional and global biogeographical studies on plant functional traits are gradually exploring community species coexistence mechanisms and maintenance of ecosystem functions. Researchers have found that traditional plant trait databases, which were created from published studies, have insufficient data to provide answers to questions about natural ecosystems. Therefore, constructing a plant trait database that considers compatibility and orderliness is crucial. As new databases and scientific concepts have emerged, the following areas have become the focus of studies on plant functional traits: 1) coordination between functional traits of different plant organs, and holistic examination of plant response to environmental changes; 2) multi-dimensional response and adaptation of various plant functional traits, and proposal of the concept of a plant trait network; 3) consideration of the complexity of plant community structure, and exploration of community assembly using plant functional diversity and trait moments; and 4) refinement of the scaling method for different levels of ecological organization, and recognition of plant community and ecosystem traits as critical bridges between plant traits and macroecology. These directions have pushed for the application of traditional functional trait research to natural, social, and economic systems, thus promoting the rapid development of trait-based studies to further solve regional eco-environmental problems.

Nitrogen, the essential macronutrient in plants, plays a critical role in regulating plant growth and development, especially for crops production. To gain high crop yield, a large amount N fertilizer is usually applied to the planting field. However, the excessive use of chemical fertilizers has aggravated the agricultural non-point source pollution (NSP). Increasing crop yield under reduced fertilizer consumption can be achieved by increasing nitrogen use efficiency (NUE), which is crucial for promoting sustainable agriculture and for achieving agriculture and food security. In response to nitrogen-deficiency condition under natural environments, high-affinity nitrate transporter 2 (NRT2) proteins have evolved in plants. Among them, NRT2.1 subfamily acts as the main component of nitrate uptake in roots under conditions of nitrate deficiency. Here we summarize the latest progresses of the function and molecular mechanism of the NRT2 proteins, particularly of the NRT2.1 subfamily in Arabidopsis and several important crops and discuss the future directions of NRT2 research. This review aims to provide an important basis for the subsequent exploration of the potential of NRT2 proteins in increasing crop yield and the underlying molecular mechanisms.

Background & Aims: With the development and advancement of artificial intelligence technology, large language models (LLMs), such as Kimi Chat, have begun to play a significant role in biodiversity research. LLMs’s deep learning and natural language processing technologies, augmented by human feedback reinforced learning (RLHF) and proximal policy optimization (PPO), offer new avenues for handling and analyzing large biodiversity data sets.
Progresses: We explore the application of LLMs, taking Kimi Chat as an example, in investigating biodiversity research questions, reviewing literature, designing hypotheses, organizing and analyzing data, and writing research papers, as well as its potential to enhance research efficiency and quality. (1) LLMs can quickly process vast amounts of scientific literature, helping researchers distill key information and swiftly catch up with the latest research trends in specific fields. (2) LLMs can also assist researchers in formulating research hypotheses and designing experimental protocols, thereby providing abundant scientific inspiration, broadening research perspectives, and enhancing the efficiency of the initial stages of research. (3) In terms of research design, LLMs can offer advice on data collection methods, design of experiment, and statistical analyses to ensure the scientific validity and the logic of the research design. (4) LLMs can assist in scientific writing and peer review processes by helping draft scientific papers and providing suggestions for revision and polishing to enhance the quality and readability of the papers, and it also supports researchers in understanding and responding to peer review comments and optimizing the presentation of research findings. We also discuss the challenges and limitations encountered during using LLMs, such as the need for professional judgment, the homogenization of research methods, the accuracy of data and results, and ethical issues. Additionally, we propose strategies for integrating this technology with traditional biodiversity research methods in the future.
Prospects: We demonstrates how LLMs can aid in biodiversity research, thus advancing scientific discovery and ecological conservation strategies.

As of January 2023, China has a total of 312 snake species, establishing itself as one of the most diverse countries in terms of snake biodiversity worldwide. The characteristics exhibited by snakes hold significant sway over their survival within their respective environments, making them an important role in the study of their evolutionary biology, ecology, and conservation biology. However, a comprehensive dataset encompassing the morphological, life-history, and ecological traits of Chinese snakes has yet to be established. Therefore, the primary objective of this study is to provide a comprehensive dataset comprising the various traits exhibited by Chinese snakes. To accomplish this goal, we conducted a systematic collection of data from a range of sources, including published snake books, the peer-reviewed and non-peer-reviewed literatures, as well as the Reptile Database (https://reptile-database.reptarium.cz/). Our data compilation encompasses 41 distinctive traits, which were classified into three main types: morphological traits (25 traits such as scales and teeth), life-history traits (11 traits such as body length, diet, foraging mode, reproductive modes, clutch size, egg size, activity time, and venomousness), and ecological traits (5 traits such as Chinese/island endemism, adult habitat, geographical and elevational distributions). Among all these 41 traits, apart from geographical distribution, mental and rostral scales, which are 100% complete, the data on other traits were incomplete to varying degrees, ranging from 7.72% to 99.70%. This dataset is the most up-to-date and comprehensive collection of Chinese snake traits available to date. It provides a unique and invaluable resource for exploring the evolution, biogeography, ecology, and conservation biology of Chinese snakes.